LOC101928940 Gene (RNA Gene)

Uncharacterized LOC101928940

GC11M114347
GIFtS:
6

Aliases for LOC101928940 Gene

Subcategory (RNA class) for LOC101928940 Gene

lncRNA

Quality Score for this RNA gene is

14

Aliases for LOC101928940 Gene

  • Uncharacterized LOC101928940 3
  • Lnc-C11orf71-1 170
  • NONHSAG009663 94
  • HSALNG0087301 169

External Ids for LOC101928940 Gene

Previous GeneCards Identifiers for LOC101928940 Gene

  • GC11U901996

Summaries for LOC101928940 Gene

GeneCards Summary for LOC101928940 Gene

LOC101928940 (Uncharacterized LOC101928940) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC101928940 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC101928940 Gene

Genomics for LOC101928940 Gene

GeneHancer (GH) Regulatory Elements for LOC101928940 Gene

Promoters and enhancers for LOC101928940 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH11J114377 Enhancer 0.6 Ensembl ENCODE 750.6 +1.8 1838 2 POU5F1 FOS BATF JUND LOC101928940 RBM7 ENSG00000255663 C11orf71 lnc-RBM7-1 ENSG00000256195
GH11J114380 Enhancer 0.2 Ensembl 750.6 -0.5 -462 0.2 LOC101928940 RBM7 lnc-RBM7-1 ENSG00000256195
GH11J114379 Enhancer 0.2 Ensembl 750.6 +0.4 438 0.4 LOC101928940 ENSG00000255663 C11orf71 RBM7 lnc-RBM7-1 ENSG00000256195
GH11J114365 Enhancer 0.6 Ensembl ENCODE 0.4 +13.2 13189 2.8 POLR2A JUN JUND RBM7 C11orf71 ENSG00000255663 ENSG00000270179 lnc-RBM7-1 ENSG00000256947 LOC101928940 ENSG00000256195
GH11J114395 Enhancer 0.5 Ensembl 0.4 -16.0 -15962 0.8 CTCF MIXL1 CBFA2T2 ZBTB17 RAD21 TCF12 TEAD3 CBFA2T3 ENSG00000256195 RBM7 C11orf71 LOC101928940
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC101928940 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC101928940 Gene

Genomic Locations for LOC101928940 Gene
chr11:114,360,635-114,380,039
(GRCh38/hg38)
Size:
19,405 bases
Orientation:
Minus strand

Genomic View for LOC101928940 Gene

Genes around LOC101928940 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC101928940 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101928940 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LOC101928940 Gene

Proteins for LOC101928940 Gene

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  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for LOC101928940 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101928940 Gene

Domains & Families for LOC101928940 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC101928940 Gene

Function for LOC101928940 Gene

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  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101928940 Gene

Localization for LOC101928940 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101928940 Gene

Pathways & Interactions for LOC101928940 Gene

PathCards logo

SuperPathways for LOC101928940 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC101928940 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC101928940 Gene

Drugs & Compounds for LOC101928940 Gene

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  1. Drug
No Compound Related Data Available

Transcripts for LOC101928940 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for LOC101928940 Gene

(1) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(4) RNACentral transcripts :
(4) LNCipedia transcripts :
(2) NONCODE transcripts :
(1) LncBook transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101928940 Gene

No ASD Table

Relevant External Links for LOC101928940 Gene

GeneLoc Exon Structure for
LOC101928940

Expression for LOC101928940 Gene

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  1. Primer
  2. Gene Expression Assay

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC101928940 Gene

mRNA expression in normal human tissues for LOC101928940 Gene
mRNA expression by GTEx for LOC101928940 Gene
genes like me logo Genes that share expression patterns with LOC101928940: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101928940 Gene

Orthologs for LOC101928940 Gene

No data available for Orthologs and Evolution for LOC101928940 Gene

Paralogs for LOC101928940 Gene

No data available for Paralogs for LOC101928940 Gene

Variants for LOC101928940 Gene

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  1. SNP Genotyping and Copy Number Assay

Sequence variations from dbSNP and Humsavar for LOC101928940 Gene

SNP ID Clin Chr 11 pos Variation AA Info Type
rs1000176522 -- 114,379,537(-) G/A intron_variant
rs1000309834 -- 114,362,478(-) C/G non_coding_transcript_variant
rs1000609907 -- 114,371,001(-) A/C intron_variant
rs1000781925 -- 114,380,846(-) C/T upstream_transcript_variant
rs1001042161 -- 114,366,548(-) C/T intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC101928940 Gene

Disorders for LOC101928940 Gene

No disorders were found for LOC101928940 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC101928940 Gene

Publications for LOC101928940 Gene

  1. Meta-analysis of genome-wide association studies of asthma in ethnically diverse North American populations. (PMID: 21804549) Torgerson DG … Nicolae DL (Nature genetics 2011) 3 56
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 56

No data available for External Links for LOC101928940 Gene

Products for LOC101928940 Gene

Sources for LOC101928940 Gene