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Aliases for LOC101928940 Gene
Subcategory (RNA class) for LOC101928940 Gene
lncRNA
Number of RNA Genes sources:
3 / 17
Aliases for LOC101928940 Gene
External Ids for LOC101928940 Gene
- Entrez Gene: 101928940
Previous GeneCards Identifiers for LOC101928940 Gene
- GC11U901996
Summaries for LOC101928940 Gene
GeneCards Summary for LOC101928940 Gene
LOC101928940 (Uncharacterized LOC101928940) is an RNA Gene, and is affiliated with the lncRNA class.
Additional gene information for LOC101928940 Gene
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC101928940 Gene
Genomics for LOC101928940 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for LOC101928940 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH11J114377 | Enhancer | 0.6 | Ensembl ENCODE | 600.7 | +1.8 | 1844 | 2 | JUND FOS BATF POU5F1 SPI1 | LOC101928940 RBM7 ENSG00000255663 C11orf71 lnc-RBM7-1 LOC107984391 ENSG00000256195 NNMT | |
| GH11J114379 | Enhancer | 0.3 | Ensembl | 600.7 | +0.4 | 444 | 0.4 | GATA2 | LOC101928940 ENSG00000255663 RBM7 C11orf71 lnc-RBM7-1 LOC107984391 ENSG00000256195 NNMT | |
| GH11J114380 | Enhancer | 0.2 | Ensembl | 600.7 | -0.5 | -456 | 0.2 | LOC101928940 RBM7 lnc-RBM7-1 LOC107984391 ENSG00000256195 NNMT | ||
| GH11J114365 | Enhancer | 0.6 | Ensembl ENCODE | 0.4 | +13.2 | 13195 | 2.8 | POLR2A JUND CEBPB JUN | RBM7 C11orf71 ENSG00000255663 ENSG00000270179 LOC107984391 LOC101928940 ENSG00000256947 ENSG00000256195 NNMT | |
| GH11J114395 | Enhancer | 0.6 | Ensembl | 0.4 | -16.0 | -15956 | 0.8 | CTCF TEAD4 FOXA1 HMBOX1 ZBTB17 RAD21 TCF12 TEAD3 CBFA2T2 MIXL1 | ENSG00000256195 RBM7 C11orf71 LOC101928940 NNMT |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around LOC101928940 on the GeneHancer Hub at the UCSC Golden Path
Genomic Locations for LOC101928940 Gene
Genomic Locations for LOC101928940 Gene
- chr11:114,360,635-114,380,045
- (GRCh38/hg38)
- Size:
- 19,411 bases
- Orientation:
- Minus strand
Genomic View for LOC101928940 Gene
Genes around LOC101928940 on UCSC Golden Path with GeneCards custom track
LOC101928940 in the GeneCards ncRNA compendium hub on the UCSC Golden Path
- Cytogenetic band:
-
- 11q23.2 by Entrez Gene
LOC101928940 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for LOC101928940 Gene
Proteins for LOC101928940 Gene
Post-translational modifications for LOC101928940 Gene
No Post-translational modifications
Antibody Products
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LOC101928940
- Origene Custom Protein Services for LOC101928940
No data available for DME Specific Peptides for LOC101928940 Gene
Domains & Families for LOC101928940 Gene
No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC101928940 Gene
Function for LOC101928940 Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
miRNA Products
Inhibitory RNA Products
Clone Products
No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101928940 Gene
Localization for LOC101928940 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101928940 Gene
Transcripts for LOC101928940 Gene
Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC101928940 Gene
| RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
|---|---|---|---|---|
| URS000075B533_9606 | lncRNA | 3831 | 2 |
RefSeq: NR_120567, LNCipedia: lnc-C11orf71-1:5, |
| URS00008BE480_9606 | lncRNA | 279 | 3 |
LncBook: HSALNT0181396, LNCipedia: lnc-C11orf71-1:4, NONCODE: NONHSAT024280.2, |
| URS00008B608C_9606 | lncRNA | 3841 | 2 |
LNCipedia: lnc-C11orf71-1:1, NONCODE: NONHSAT024278.2, |
| URS00008BDC3C_9606 | lncRNA | 277 | 1 |
LNCipedia: lnc-C11orf71-1:2, |
LOC101928940 in the GeneCards ncRNA compendium hub on the UCSC Golden Path
Additional transcripts not in RNAcentral for LOC101928940 Gene
- 1 NCBI additional mRNA sequence :
miRNA Products
Inhibitory RNA Products
Clone Products
Relevant External Links for LOC101928940 Gene
- GeneLoc Exon Structure for
- LOC101928940
Expression for LOC101928940 Gene
Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC101928940
Primer Products
Gene Expression Assay Products
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101928940 Gene
Orthologs for LOC101928940 Gene
No data available for Orthologs and Evolution for LOC101928940 Gene
Paralogs for LOC101928940 Gene
No data available for Paralogs for LOC101928940 Gene
Variants for LOC101928940 Gene
SNP Genotyping and Copy Number Assay Products
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC101928940 Gene
Disorders for LOC101928940 Gene
No disorders were found for LOC101928940 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC101928940 Gene
Publications for LOC101928940 Gene
- Meta-analysis of genome-wide association studies of asthma in ethnically diverse North American populations. (PMID: 21804549) Torgerson DG … Nicolae DL (Nature genetics 2011) 3
- Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3
No data available for Mastermind for LOC101928940 Gene
Products for LOC101928940 Gene
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- Custom Assay Services
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- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
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- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
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- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for LOC101928940
Sources for LOC101928940 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) Genetics Home Reference
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNACentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Signalway Antibody
- (175) Open Targets Platform
- (176) 5SRRNADB
- (177) snoDB
- (178) MirGeneDB