LOC101928940 Gene (RNA Gene)

Uncharacterized LOC101928940

GC11M114347
GIFtS:
9
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Aliases for LOC101928940 Gene

Data sources for LOC101928940 Gene:

Subcategory (RNA class) for LOC101928940 Gene

lncRNA

Aliases for LOC101928940 Gene

External Ids for LOC101928940 Gene

Previous GeneCards Identifiers for LOC101928940 Gene

  • GC11U901996

Summaries for LOC101928940 Gene

GeneCards Summary for LOC101928940 Gene

LOC101928940 (Uncharacterized LOC101928940) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC101928940 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC101928940 Gene

Genomics for LOC101928940 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for LOC101928940 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC101928940 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC101928940 Gene

Latest Assembly
chr11:114,343,052-114,433,022
(GRCh38/hg38)
Size:
89,971 bases
Orientation:
Minus strand

Previous Assembly
chr11:114,231,357-114,250,761
(GRCh37/hg19 by Entrez Gene)
Size:
19,405 bases
Orientation:
Minus strand

chr11:114,231,357-114,250,767
(GRCh37/hg19 by Ensembl)
Size:
19,411 bases
Orientation:
Minus strand

Genomic View for LOC101928940 Gene

Genes around LOC101928940 on UCSC Golden Path with GeneCards custom track
LOC101928940 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LOC101928940 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101928940 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LOC101928940 Gene

Proteins for LOC101928940 Gene

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Post-translational modifications for LOC101928940 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101928940 Gene

Domains & Families for LOC101928940 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC101928940 Gene

Function for LOC101928940 Gene

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  1. Animal Models for research
  2. CRISPR products for research
  3. miRNA products for research
  4. Inhibitory RNAs for research
  5. Clone products for research
  6. Cell Lines for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101928940 Gene

Localization for LOC101928940 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101928940 Gene

Pathways & Interactions for LOC101928940 Gene

PathCards logo

SuperPathways for LOC101928940 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC101928940 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC101928940 Gene

Drugs & Compounds for LOC101928940 Gene

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No Compound Related Data Available

Transcripts for LOC101928940 Gene

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Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC101928940 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000060C450_9606 lncRNA 3837 3

Ensembl: ENST00000534904 (view in UCSC) ,

LNCipedia: lnc-C11orf71-1:3,

NONCODE: NONHSAT024277.2,

URS000075B533_9606 lncRNA 3831 2

RefSeq: NR_120567,

LNCipedia: lnc-C11orf71-1:5,

URS0000EEDA95_9606 lncRNA 804 1

Ensembl: ENST00000658199 (view in UCSC) ,

URS00008BE480_9606 lncRNA 281 3

LncBook: HSALNT0181396,

LNCipedia: lnc-C11orf71-1:4,

NONCODE: NONHSAT024280.2,

URS00008B608C_9606 lncRNA 3844 2

LNCipedia: lnc-C11orf71-1:1,

NONCODE: NONHSAT024278.2,

LOC101928940 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC101928940 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101928940 Gene

No ASD Table

Relevant External Links for LOC101928940 Gene

GeneLoc Exon Structure for
LOC101928940

Expression for LOC101928940 Gene

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mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC101928940 Gene

mRNA expression in normal human tissues for LOC101928940 Gene
mRNA expression by GTEx for LOC101928940 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC101928940

genes like me logo Genes that share expression patterns with LOC101928940: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101928940 Gene

Orthologs for LOC101928940 Gene

Evolution for LOC101928940 Gene

ENSEMBL:
Gene Tree for LOC101928940 (if available)
TreeFam:
Gene Tree for LOC101928940 (if available)

No data available for Orthologs for LOC101928940 Gene

Paralogs for LOC101928940 Gene

No data available for Paralogs for LOC101928940 Gene

Variants for LOC101928940 Gene

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  1. SNP Genotyping and Copy Number Assays for research

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LOC101928940 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC101928940 Gene

Disorders for LOC101928940 Gene

No disorders were found for LOC101928940 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC101928940 Gene

Publications for LOC101928940 Gene

  1. Meta-analysis of genome-wide association studies of asthma in ethnically diverse North American populations. (PMID: 21804549) Torgerson DG … Nicolae DL (Nature genetics 2011) 3
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

No data available for Mastermind for LOC101928940 Gene

Products for LOC101928940 Gene

Sources for LOC101928940 Gene