Aliases for LOC101928881 Gene

Subcategory (RNA class) for LOC101928881 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LOC101928881 Gene

  • Uncharacterized LOC101928881 3
  • Novel Transcript, Antisense To NGEF 5
  • NONHSAG030807.2 91
  • HSALNG0023069 164
  • AC106876.1 5
  • Lnc-NEU2-1 165

External Ids for LOC101928881 Gene

Previous GeneCards Identifiers for LOC101928881 Gene

  • GC02U902632

Summaries for LOC101928881 Gene

GeneCards Summary for LOC101928881 Gene

LOC101928881 (Uncharacterized LOC101928881) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC101928881 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC101928881 Gene

Genomics for LOC101928881 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC101928881 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J233011 Promoter/Enhancer 1.6 EPDnew Ensembl ENCODE 600.7 +0.2 166 1.8 HNRNPL GATAD2A TFE3 SOX13 NFKBIZ RCOR2 RBFOX2 RXRB IRF2 SP1 NGEF LOC101928881 SCARNA6 EEF1B2P7 GIGYF2 PPFIA1P1 SNORC
GH02J233013 Promoter 0.3 Ensembl 600.7 -0.9 -913 0.2 LOC101928881 NGEF RF00017-3464 SNORC
GH02J233010 Enhancer 0.3 Ensembl 600.7 -1.6 -1613 0.4 GLIS1 LOC101928881 NGEF RF00017-3464 SNORC
GH02J233012 Enhancer 0.2 FANTOM5 600.7 -1.0 -1022 0 NGEF LOC101928881 NEU2 RF00017-3464 SNORC
GH02J232852 Promoter/Enhancer 1.7 EPDnew Ensembl ENCODE dbSUPER 10.1 -155.7 -155707 10.2 CREB1 GATAD2A CTCF ATF7 PRDM10 REST TFE3 SOX13 IKZF1 NFKBIZ SNORC GIGYF2 NGEF DIS3L2 SCARNA6 INPP5D ENSG00000251485 LOC101928881 ATG16L1 SCARNA5
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC101928881 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC101928881 Gene

Genomic Locations for LOC101928881 Gene
chr2:233,012,614-233,015,885
(GRCh38/hg38)
Size:
3,272 bases
Orientation:
Plus strand

Genomic View for LOC101928881 Gene

Genes around LOC101928881 on UCSC Golden Path with GeneCards custom track
LOC101928881 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LOC101928881 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101928881 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC101928881 Gene

Proteins for LOC101928881 Gene

Post-translational modifications for LOC101928881 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101928881 Gene

Domains & Families for LOC101928881 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC101928881 Gene

Function for LOC101928881 Gene

Phenotypes From GWAS Catalog for LOC101928881 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101928881 Gene

Localization for LOC101928881 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101928881 Gene

Pathways & Interactions for LOC101928881 Gene

PathCards logo

SuperPathways for LOC101928881 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC101928881 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC101928881 Gene

Drugs & Compounds for LOC101928881 Gene

No Compound Related Data Available

Transcripts for LOC101928881 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC101928881 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00009BDA09_9606 lncRNA 643 5

RefSeq: NR_136325,

Ensembl: ENST00000409905 (view in UCSC) ,

LncBook: HSALNT0048806,

LNCipedia: lnc-NEU2-1:2,

NONCODE: NONHSAT183761.1,

URS00008B7F1B_9606 lncRNA 534 3

LncBook: HSALNT0048808,

LNCipedia: lnc-NEU2-1:3,

NONCODE: NONHSAT077457.2,

LOC101928881 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC101928881 Gene

1 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101928881 Gene

No ASD Table

Relevant External Links for LOC101928881 Gene

GeneLoc Exon Structure for
LOC101928881

Expression for LOC101928881 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC101928881 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC101928881

genes like me logo Genes that share expression patterns with LOC101928881: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101928881 Gene

Orthologs for LOC101928881 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for LOC101928881 Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia -- 31
  • 98 (a)
OneToOne
Species where no ortholog for LOC101928881 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • Cow (Bos Taurus)
  • Dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Lizard (Anolis carolinensis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Mouse (Mus musculus)
  • Oppossum (Monodelphis domestica)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Platypus (Ornithorhynchus anatinus)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)
  • Zebrafish (Danio rerio)

Evolution for LOC101928881 Gene

ENSEMBL:
Gene Tree for LOC101928881 (if available)
TreeFam:
Gene Tree for LOC101928881 (if available)

Paralogs for LOC101928881 Gene

No data available for Paralogs for LOC101928881 Gene

Variants for LOC101928881 Gene

Additional dbSNP identifiers (rs#s) for LOC101928881 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC101928881 Gene

Disorders for LOC101928881 Gene

Additional Disease Information for LOC101928881

No disorders were found for LOC101928881 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC101928881 Gene

Publications for LOC101928881 Gene

No publications were found for LOC101928881 Gene.

No data available for Mastermind for LOC101928881 Gene

Products for LOC101928881 Gene

Sources for LOC101928881 Gene