Aliases for LOC101928847 Gene

Data sources for LOC101928847 Gene:

Subcategory (RNA class) for LOC101928847 Gene

lncRNA

Aliases for LOC101928847 Gene

External Ids for LOC101928847 Gene

Previous GeneCards Identifiers for LOC101928847 Gene

  • GC11U901991

Summaries for LOC101928847 Gene

GeneCards Summary for LOC101928847 Gene

LOC101928847 (Uncharacterized LOC101928847) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC101928847 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC101928847 Gene

Genomics for LOC101928847 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC101928847 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J112960 Promoter/Enhancer 2.3 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 255 +0.8 790 3.8 ZSCAN16 CHD2 ZBTB10 FEZF1 ZEB1 ZIC2 ZNF610 SIN3A ZNF639 KLF7 NCAM1 LOC101928847 ENSG00000270179 NKAPD1 ZW10 TTC12
GH11J112881 Promoter/Enhancer 1.2 FANTOM5 ENCODE CraniofacialAtlas dbSUPER 10.8 +80.9 80947 3 SP2 PKNOX1 TAF1 NFYC RCOR1 SP1 GATA2 POLR2A CHD2 HSALNG0087227 piR-51616 NCAM1 LOC101928847 RNU7-187P ENSG00000288070 PLET1
GH11J112878 Enhancer 0.7 Ensembl ENCODE dbSUPER 10.8 +85.4 85389 1.4 ZSCAN4 POLR2A NCAM1 LOC101928847 RNU7-187P HSALNG0087227 ENSG00000288070 HSALNG0087226 PLET1
GH11J113013 Enhancer 1.1 Ensembl ENCODE CraniofacialAtlas 4.6 -51.1 -51130 2 ZSCAN16 FEZF1 ZNF639 ZNF341 ZNF843 KLF9 PRDM6 ZNF24 ZNF189 SCRT1 LOC101928847 NCAM1 lnc-TTC12-2 piR-38051-067 TTC12
GH11J112843 Enhancer 0.5 Ensembl ENCODE dbSUPER 10.1 +118.9 118914 1.2 LOC101928847 NCAM1 NCAM1-AS1 TMPRSS5 LOC105369498 HSALNG0087226 ENSG00000288070 PLET1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC101928847 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC101928847 Gene

Latest Assembly
chr11:112,959,209-112,963,470
(GRCh38/hg38)
Size:
4,262 bases
Orientation:
Minus strand

Previous Assembly
chr11:112,830,002-112,834,182
(GRCh37/hg19 by Entrez Gene)
Size:
4,181 bases
Orientation:
Minus strand

chr11:112,830,002-112,834,182
(GRCh37/hg19 by Ensembl)
Size:
4,181 bases
Orientation:
Minus strand

Genomic View for LOC101928847 Gene

Genes around LOC101928847 on UCSC Golden Path with GeneCards custom track
LOC101928847 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LOC101928847 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101928847 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC101928847 Gene

Proteins for LOC101928847 Gene

Post-translational modifications for LOC101928847 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101928847 Gene

Domains & Families for LOC101928847 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC101928847 Gene

Function for LOC101928847 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101928847 Gene

Localization for LOC101928847 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101928847 Gene

Pathways & Interactions for LOC101928847 Gene

PathCards logo

SuperPathways for LOC101928847 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC101928847 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC101928847 Gene

Drugs & Compounds for LOC101928847 Gene

No Compound Related Data Available

Transcripts for LOC101928847 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC101928847 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00003EF1EB_9606 lncRNA 1937 3

Ensembl: ENST00000500537 (view in UCSC) ,

LNCipedia: lnc-DRD2-3:1, lnc-DRD2-3:4,

NONCODE: NONHSAT024227.2,

URS0000EEB0B8_9606 lncRNA 2399 1

Ensembl: ENST00000654875 (view in UCSC) ,

URS0000EF1B5C_9606 lncRNA 1969 1

Ensembl: ENST00000532002 (view in UCSC) ,

URS000075E6FD_9606 lncRNA 1933 1

RefSeq: NR_120563,

URS0000DB8B3D_9606 lncRNA 1680 1

Ensembl: ENST00000649843 (view in UCSC) ,

LOC101928847 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC101928847 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101928847 Gene

No ASD Table

Relevant External Links for LOC101928847 Gene

GeneLoc Exon Structure for
LOC101928847

Expression for LOC101928847 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC101928847 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC101928847

genes like me logo Genes that share expression patterns with LOC101928847: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101928847 Gene

Orthologs for LOC101928847 Gene

Evolution for LOC101928847 Gene

ENSEMBL:
Gene Tree for LOC101928847 (if available)
TreeFam:
Gene Tree for LOC101928847 (if available)

No data available for Orthologs for LOC101928847 Gene

Paralogs for LOC101928847 Gene

No data available for Paralogs for LOC101928847 Gene

Variants for LOC101928847 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LOC101928847 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC101928847 Gene

Disorders for LOC101928847 Gene

Additional Disease Information for LOC101928847

Open Targets Platform
Open Targets Platform

No disorders were found for LOC101928847 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC101928847 Gene

Publications for LOC101928847 Gene

No publications were found for LOC101928847 Gene.

No data available for Mastermind for LOC101928847 Gene

Products for LOC101928847 Gene

Sources for LOC101928847 Gene