Aliases for LOC101928844 Gene

Subcategory (RNA class) for LOC101928844 Gene

lncRNA

Number of RNA Genes sources:

2 / 17

Aliases for LOC101928844 Gene

  • Uncharacterized LOC101928844 3
  • Novel Transcript, Antisense To FUT3 5
  • NONHSAG024580.2 91
  • AC024592.2 5
  • Lnc-NRTN-2 165

External Ids for LOC101928844 Gene

Previous GeneCards Identifiers for LOC101928844 Gene

  • GC19U901671

Summaries for LOC101928844 Gene

GeneCards Summary for LOC101928844 Gene

LOC101928844 (Uncharacterized LOC101928844) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC101928844 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC101928844 Gene

Genomics for LOC101928844 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC101928844 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J005846 Promoter/Enhancer 1.2 EPDnew Ensembl ENCODE dbSUPER 600.7 -0.6 -566 0.6 GATAD2A ZBTB11 REST LOC101928844 RF00017-2769 FUT3 lnc-FUT6-1 FUT6
GH19J005852 Enhancer 0.2 dbSUPER 600.7 -1.5 -1452 0.2 LOC101928844 RF00017-2769 FUT6 FUT3
GH19J005851 Promoter/Enhancer 1.5 EPDnew Ensembl ENCODE dbSUPER 0.7 +2.4 2385 4.1 RNF2 PATZ1 CEBPA SCRT2 CEBPB ATF3 ZBTB17 NFIC CEBPG ZNF384 lnc-FUT6-1 FUT3 NRTN DUS3L PRR22 CATSPERD LOC101928844 FUT6
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC101928844 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC101928844 Gene

Genomic Locations for LOC101928844 Gene
chr19:5,847,467-5,858,239
(GRCh38/hg38)
Size:
10,773 bases
Orientation:
Plus strand
chr19:5,847,478-5,858,250
(GRCh37/hg19)
Size:
10,773 bases
Orientation:
Plus strand

Genomic View for LOC101928844 Gene

Genes around LOC101928844 on UCSC Golden Path with GeneCards custom track
LOC101928844 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LOC101928844 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101928844 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC101928844 Gene

Proteins for LOC101928844 Gene

Post-translational modifications for LOC101928844 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101928844 Gene

Domains & Families for LOC101928844 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC101928844 Gene

Function for LOC101928844 Gene

Phenotypes From GWAS Catalog for LOC101928844 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101928844 Gene

Localization for LOC101928844 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101928844 Gene

Pathways & Interactions for LOC101928844 Gene

PathCards logo

SuperPathways for LOC101928844 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC101928844 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC101928844 Gene

Drugs & Compounds for LOC101928844 Gene

No Compound Related Data Available

Transcripts for LOC101928844 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC101928844 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000282E45_9606 lncRNA 1188 3

Ensembl: ENST00000589276 (view in UCSC) ,

LNCipedia: lnc-NRTN-2:1,

NONCODE: NONHSAT060717.2,

URS000075DA14_9606 lncRNA 1188 1

RefSeq: NR_110740,

LOC101928844 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC101928844 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101928844 Gene

No ASD Table

Relevant External Links for LOC101928844 Gene

GeneLoc Exon Structure for
LOC101928844

Expression for LOC101928844 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC101928844 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC101928844

genes like me logo Genes that share expression patterns with LOC101928844: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101928844 Gene

Orthologs for LOC101928844 Gene

Evolution for LOC101928844 Gene

ENSEMBL:
Gene Tree for LOC101928844 (if available)
TreeFam:
Gene Tree for LOC101928844 (if available)

No data available for Orthologs for LOC101928844 Gene

Paralogs for LOC101928844 Gene

No data available for Paralogs for LOC101928844 Gene

Variants for LOC101928844 Gene

Additional dbSNP identifiers (rs#s) for LOC101928844 Gene

Structural Variations from Database of Genomic Variants (DGV) for LOC101928844 Gene

Variant ID Type Subtype PubMed ID
nsv1062851 CNV gain 25217958
nsv1152644 CNV duplication 26484159
nsv578459 CNV gain 21841781

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Variation tolerance and Additional Variant Information for LOC101928844 Gene

Disorders for LOC101928844 Gene

Additional Disease Information for LOC101928844

No disorders were found for LOC101928844 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC101928844 Gene

Publications for LOC101928844 Gene

  1. Genetic variations affecting serum carcinoembryonic antigen levels and status of regional lymph nodes in patients with sporadic colorectal cancer from Southern China. (PMID: 24941225) Liang Y … Peng T (PloS one 2014) 3

No data available for Mastermind for LOC101928844 Gene

Products for LOC101928844 Gene

Sources for LOC101928844 Gene