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Aliases for LOC101928844 Gene

Subcategory (RNA class) for LOC101928844 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC101928844 Gene

  • Uncharacterized LOC101928844 3
  • Novel Transcript, Antisense To FUT3 5
  • AC024592.2 5

External Ids for LOC101928844 Gene

Previous GeneCards Identifiers for LOC101928844 Gene

  • GC19U901671

Summaries for LOC101928844 Gene

GeneCards Summary for LOC101928844 Gene

LOC101928844 (Uncharacterized LOC101928844) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC101928844 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC101928844 Gene

Genomics for LOC101928844 Gene

GeneHancer (GH) Regulatory Elements for LOC101928844 Gene

Promoters and enhancers for LOC101928844 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J005847 Promoter/Enhancer 0.7 EPDnew dbSUPER 600.7 -0.4 -385 0.1 LOC101928844 FUT3 FUT6
GH19J005846 Enhancer 0.6 ENCODE dbSUPER 600.7 -0.8 -782 0.2 GATAD2A ZBTB11 REST LOC101928844 FUT3 FUT6
GH19J005853 Promoter 0.6 Ensembl 600.7 +1.3 1334 0.4 KLF17 LOC101928844 FUT3
GH19J005849 Enhancer 0.3 dbSUPER 600.7 +2.0 1987 0.2 SMARCA4 LOC101928844 FUT3
GH19J005848 Enhancer 0.2 dbSUPER 600.7 +0.2 232 0.3 LOC101928844 FUT3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC101928844 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC101928844 Gene

Genomic Locations for LOC101928844 Gene
chr19:5,847,467-5,858,239
(GRCh38/hg38)
Size:
10,773 bases
Orientation:
Plus strand
chr19:5,847,478-5,858,250
(GRCh37/hg19)
Size:
10,773 bases
Orientation:
Plus strand

Genomic View for LOC101928844 Gene

Genes around LOC101928844 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC101928844 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101928844 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC101928844 Gene

Proteins for LOC101928844 Gene

Post-translational modifications for LOC101928844 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101928844 Gene

Domains & Families for LOC101928844 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC101928844 Gene

Function for LOC101928844 Gene

Phenotypes From GWAS Catalog for LOC101928844 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101928844 Gene

Localization for LOC101928844 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101928844 Gene

Pathways & Interactions for LOC101928844 Gene

PathCards logo

SuperPathways for LOC101928844 Gene

No Data Available

Interacting Proteins for LOC101928844 Gene

Gene Ontology (GO) - Biological Process for LOC101928844 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC101928844 Gene

Drugs & Compounds for LOC101928844 Gene

No Compound Related Data Available

Transcripts for LOC101928844 Gene

mRNA/cDNA for LOC101928844 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(2) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101928844 Gene

No ASD Table

Relevant External Links for LOC101928844 Gene

GeneLoc Exon Structure for
LOC101928844

Expression for LOC101928844 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101928844 Gene

Orthologs for LOC101928844 Gene

Evolution for LOC101928844 Gene

ENSEMBL:
Gene Tree for LOC101928844 (if available)
TreeFam:
Gene Tree for LOC101928844 (if available)

No data available for Orthologs for LOC101928844 Gene

Paralogs for LOC101928844 Gene

No data available for Paralogs for LOC101928844 Gene

Variants for LOC101928844 Gene

Sequence variations from dbSNP and Humsavar for LOC101928844 Gene

SNP ID Clin Chr 19 pos Variation AA Info Type
rs1000000270 -- 5,855,991(+) T/C intron_variant
rs1000036269 -- 5,857,433(+) CCCC/CCC intron_variant
rs1000408635 -- 5,857,535(+) C/G intron_variant
rs1000820395 -- 5,852,261(+) G/A intron_variant
rs1000897292 -- 5,853,464(+) A/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC101928844 Gene

Variant ID Type Subtype PubMed ID
nsv1062851 CNV gain 25217958
nsv1152644 CNV duplication 26484159
nsv578459 CNV gain 21841781

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC101928844 Gene

Disorders for LOC101928844 Gene

No disorders were found for LOC101928844 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC101928844 Gene

Publications for LOC101928844 Gene

  1. Genetic variations affecting serum carcinoembryonic antigen levels and status of regional lymph nodes in patients with sporadic colorectal cancer from Southern China. (PMID: 24941225) Liang Y … Peng T (PloS one 2014) 3 58

No data available for External Links for LOC101928844 Gene

Products for LOC101928844 Gene

Sources for LOC101928844 Gene

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