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Aliases for LOC101928816 Gene

Subcategory (RNA class) for LOC101928816 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for LOC101928816 Gene

  • Uncharacterized LOC101928816 3
  • AC010149.1 5

External Ids for LOC101928816 Gene

Previous GeneCards Identifiers for LOC101928816 Gene

  • GC02U902683

Summaries for LOC101928816 Gene

GeneCards Summary for LOC101928816 Gene

LOC101928816 (Uncharacterized LOC101928816) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC101928816 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC101928816 Gene

Genomics for LOC101928816 Gene

GeneHancer (GH) Regulatory Elements for LOC101928816 Gene

Promoters and enhancers for LOC101928816 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02I230577 Enhancer 0.7 dbSUPER 550.8 +1.5 1455 1.2 PKNOX1 FOXA2 BATF IRF4 ATF7 ETV6 BCLAF1 IKZF2 RUNX3 ZBED1 LOC101928816 TPM3P8
GH02I231462 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 18.3 -884.4 -884424 3.8 HDGF HNRNPUL1 PKNOX1 CLOCK SMAD1 MLX ZFP64 ARID4B NEUROD1 SIN3A NCL DIS3L2 RPL28P2 LOC101928816 NMUR1 COPS7B ENSG00000251485 RNU2-22P ENSG00000224376 LINC00471
GH02I230656 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 12 -80.8 -80840 8.4 HDGF PKNOX1 SMAD1 ARNT YBX1 IRF4 POLR2B ZNF766 ZNF207 ZNF143 CAB39 LOC101928816 RNU6-451P ZBTB8OSP2 LINC00471 SP110 SP140 GPR55 ARMC9 SP140L
GH02I231056 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 10.1 -478.3 -478321 4.6 FOXA2 ARNT ZFP64 ARID4B SIN3A DMAP1 ZNF2 ZBTB7B YY1 POLR2B PSMD1 HTR2B C2orf72 RPL28P2 DIS3L2 COPS7B NCL SPATA3 SPATA3-AS1 LOC101928816
GH02I230755 Enhancer 1 Ensembl ENCODE 11 -177.6 -177647 4.7 PKNOX1 FOXA2 ZNF493 ZFP64 YBX1 ZNF155 ZNF213 ZNF138 ATF7 IKZF2 NCL FBXO36 SLC16A14 CAB39 LOC101928816 TEX44 RNU6-451P RNU6-268P GC02P230779
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC101928816 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC101928816 Gene

Genomic Locations for LOC101928816 Gene
chr2:230,443,107-230,580,006
(GRCh38/hg38)
Size:
136,900 bases
Orientation:
Minus strand

Genomic View for LOC101928816 Gene

Genes around LOC101928816 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC101928816 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101928816 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC101928816 Gene

Proteins for LOC101928816 Gene

Post-translational modifications for LOC101928816 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101928816 Gene

Domains & Families for LOC101928816 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC101928816 Gene

Function for LOC101928816 Gene

Phenotypes From GWAS Catalog for LOC101928816 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101928816 Gene

Localization for LOC101928816 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101928816 Gene

Pathways & Interactions for LOC101928816 Gene

SuperPathways for LOC101928816 Gene

No Data Available

Interacting Proteins for LOC101928816 Gene

Gene Ontology (GO) - Biological Process for LOC101928816 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC101928816 Gene

Drugs & Compounds for LOC101928816 Gene

No Compound Related Data Available

Transcripts for LOC101928816 Gene

mRNA/cDNA for LOC101928816 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101928816 Gene

No ASD Table

Relevant External Links for LOC101928816 Gene

GeneLoc Exon Structure for
LOC101928816

Expression for LOC101928816 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101928816 Gene

Orthologs for LOC101928816 Gene

Evolution for LOC101928816 Gene

ENSEMBL:
Gene Tree for LOC101928816 (if available)
TreeFam:
Gene Tree for LOC101928816 (if available)

No data available for Orthologs for LOC101928816 Gene

Paralogs for LOC101928816 Gene

No data available for Paralogs for LOC101928816 Gene

Variants for LOC101928816 Gene

Sequence variations from dbSNP and Humsavar for LOC101928816 Gene

SNP ID Clin Chr 02 pos Variation AA Info Type
rs1000126826 -- 230,490,803(-) G/A genic_downstream_transcript_variant, intron_variant
rs1000233017 -- 230,484,111(-) T/C genic_downstream_transcript_variant, intron_variant
rs1000272475 -- 230,503,416(-) T/A intron_variant
rs1000277165 -- 230,459,915(-) T/C genic_downstream_transcript_variant, intron_variant
rs1000285135 -- 230,510,054(-) A/G intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC101928816 Gene

Disorders for LOC101928816 Gene

No disorders were found for LOC101928816 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC101928816 Gene

Publications for LOC101928816 Gene

No publications were found for LOC101928816 Gene.

Products for LOC101928816 Gene

Sources for LOC101928816 Gene

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