Aliases for LOC101928796 Gene

Subcategory (RNA class) for LOC101928796 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LOC101928796 Gene

  • Uncharacterized LOC101928796 3
  • HSALNG0133683 167
  • NONHSAG033100 92
  • Lnc-COL6A1-1 168

External Ids for LOC101928796 Gene

Previous GeneCards Identifiers for LOC101928796 Gene

  • GC21U900492

Summaries for LOC101928796 Gene

GeneCards Summary for LOC101928796 Gene

LOC101928796 (Uncharacterized LOC101928796) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC101928796 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC101928796 Gene

Genomics for LOC101928796 Gene

GeneHancer (GH) Regulatory Elements for LOC101928796 Gene

Promoters and enhancers for LOC101928796 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH21J045970 Promoter/Enhancer 2.8 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.4 +5.9 5877 17.9 CTCF ZSCAN5C NRF1 BCLAF1 JUND FOS ZNF639 ZIC2 ZBTB10 ZNF423 COL6A1 LOC105372841 lnc-COL6A1-4 lnc-FTCD-2 ENSG00000228137 MCM3AP MCM3AP-AS1 POFUT2 DIP2A ENSG00000227438
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC101928796 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC101928796 Gene

Genomic Locations for LOC101928796 Gene
chr21:45,972,949-45,974,953
(GRCh38/hg38)
Size:
2,005 bases
Orientation:
Plus strand

Genomic View for LOC101928796 Gene

Genes around LOC101928796 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC101928796 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101928796 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC101928796 Gene

Proteins for LOC101928796 Gene

Post-translational modifications for LOC101928796 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101928796 Gene

Domains & Families for LOC101928796 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC101928796 Gene

Function for LOC101928796 Gene

Phenotypes From GWAS Catalog for LOC101928796 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101928796 Gene

Localization for LOC101928796 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101928796 Gene

Pathways & Interactions for LOC101928796 Gene

PathCards logo

SuperPathways for LOC101928796 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LOC101928796 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC101928796 Gene

Drugs & Compounds for LOC101928796 Gene

No Compound Related Data Available

Transcripts for LOC101928796 Gene

mRNA/cDNA for LOC101928796 Gene

5 RNACentral transcripts :
1 REFSEQ mRNAs :
1 NCBI additional mRNA sequence :
4 NONCODE transcripts :
1 LncBook transcripts :
3 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101928796 Gene

No ASD Table

Relevant External Links for LOC101928796 Gene

GeneLoc Exon Structure for
LOC101928796

Expression for LOC101928796 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101928796 Gene

Orthologs for LOC101928796 Gene

No data available for Orthologs and Evolution for LOC101928796 Gene

Paralogs for LOC101928796 Gene

No data available for Paralogs for LOC101928796 Gene

Variants for LOC101928796 Gene

Additional dbSNP identifiers (rs#s) for LOC101928796 Gene

Structural Variations from Database of Genomic Variants (DGV) for LOC101928796 Gene

Variant ID Type Subtype PubMed ID
dgv7909n54 CNV gain 21841781
dgv7910n54 CNV loss 21841781
dgv7912n54 CNV gain 21841781
dgv7919n54 CNV loss 21841781
nsv470910 CNV gain 18288195
nsv509804 CNV insertion 20534489
nsv587930 CNV loss 21841781
nsv953657 CNV deletion 24416366

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Variation tolerance and Additional Variant Information for LOC101928796 Gene

Disorders for LOC101928796 Gene

No disorders were found for LOC101928796 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC101928796 Gene

Publications for LOC101928796 Gene

No publications were found for LOC101928796 Gene.

No data available for Mastermind for LOC101928796 Gene

Products for LOC101928796 Gene

Sources for LOC101928796 Gene