Free for academic non-profit institutions. Other users need a Commercial license

Aliases for LOC101928782 Gene

Subcategory (RNA class) for LOC101928782 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for LOC101928782 Gene

  • Uncharacterized LOC101928782 3
  • AC009518.1 5

External Ids for LOC101928782 Gene

Previous GeneCards Identifiers for LOC101928782 Gene

  • GC07U903455

Summaries for LOC101928782 Gene

GeneCards Summary for LOC101928782 Gene

LOC101928782 (Uncharacterized LOC101928782) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC101928782 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC101928782 Gene

Genomics for LOC101928782 Gene

GeneHancer (GH) Regulatory Elements for LOC101928782 Gene

Promoters and enhancers for LOC101928782 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07I131894 Enhancer 1.3 FANTOM5 Ensembl ENCODE 550.8 -1.5 -1533 2.8 PKNOX1 FEZF1 ZNF2 GLIS2 ZNF213 FOS TSHZ1 ZNF488 ZNF518A ZNF610 LOC101928782 MKLN1 ENSG00000236386
GH07I131897 Enhancer 0.8 ENCODE 550.8 +0.1 56 0.2 PKNOX1 INSM2 ZNF2 ZEB1 ZNF335 ZNF366 ZSCAN5C ZNF488 ZNF843 ZFP69B LOC101928782 MKLN1 GC07P132002 PIR54354
GH07I131898 Enhancer 0.5 FANTOM5 550.8 +1.0 1049 0.3 ZFHX2 POLR2A GLIS1 EGR2 LOC101928782 GC07P132002 PIR54354
GH07I131945 Enhancer 1.1 FANTOM5 Ensembl ENCODE 0.2 +47.9 47941 0.6 CTCF ESRRA RB1 ZNF449 ZNF2 RAD21 SMC3 ZNF143 ZNF444 EZH2 LOC101928782 PIR54354 GC07P132002
GH07I131948 Enhancer 0.5 ENCODE 0.2 +51.3 51282 1 SP1 ATF3 POLR2A ZBTB33 FOSL2 GC07P132002 LOC101928782 PIR54354
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC101928782 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC101928782 Gene

Genomic Locations for LOC101928782 Gene
chr7:131,897,641-131,948,953
(GRCh38/hg38)
Size:
51,313 bases
Orientation:
Plus strand
chr7:131,582,400-131,633,712
(GRCh37/hg19)

Genomic View for LOC101928782 Gene

Genes around LOC101928782 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC101928782 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101928782 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC101928782 Gene

Proteins for LOC101928782 Gene

Post-translational modifications for LOC101928782 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101928782 Gene

Domains & Families for LOC101928782 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC101928782 Gene

Function for LOC101928782 Gene

Phenotypes From GWAS Catalog for LOC101928782 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101928782 Gene

Localization for LOC101928782 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101928782 Gene

Pathways & Interactions for LOC101928782 Gene

SuperPathways for LOC101928782 Gene

No Data Available

Interacting Proteins for LOC101928782 Gene

Gene Ontology (GO) - Biological Process for LOC101928782 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC101928782 Gene

Drugs & Compounds for LOC101928782 Gene

No Compound Related Data Available

Transcripts for LOC101928782 Gene

mRNA/cDNA for LOC101928782 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101928782 Gene

No ASD Table

Relevant External Links for LOC101928782 Gene

GeneLoc Exon Structure for
LOC101928782

Expression for LOC101928782 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC101928782 Gene

genes like me logo Genes that share expression patterns with LOC101928782: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101928782 Gene

Orthologs for LOC101928782 Gene

Evolution for LOC101928782 Gene

ENSEMBL:
Gene Tree for LOC101928782 (if available)
TreeFam:
Gene Tree for LOC101928782 (if available)

No data available for Orthologs for LOC101928782 Gene

Paralogs for LOC101928782 Gene

No data available for Paralogs for LOC101928782 Gene

Variants for LOC101928782 Gene

Sequence variations from dbSNP and Humsavar for LOC101928782 Gene

SNP ID Clin Chr 07 pos Variation AA Info Type
rs1000107935 -- 131,910,723(+) C/T intron_variant
rs1000138494 -- 131,920,880(+) A/G intron_variant
rs1000166068 -- 131,944,615(+) T/C intron_variant
rs1000248891 -- 131,945,378(+) A/G intron_variant
rs1000259721 -- 131,932,995(+) GATG/GATGATG intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC101928782 Gene

Variant ID Type Subtype PubMed ID
esv3615049 CNV loss 21293372
esv3615050 CNV loss 21293372
nsv1124267 CNV deletion 24896259
nsv1134902 CNV tandem duplication 24896259
nsv464723 CNV loss 19166990
nsv525004 CNV loss 19592680
nsv608426 CNV loss 21841781

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC101928782 Gene

Disorders for LOC101928782 Gene

Additional Disease Information for LOC101928782

No disorders were found for LOC101928782 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC101928782 Gene

Publications for LOC101928782 Gene

No publications were found for LOC101928782 Gene.

Products for LOC101928782 Gene

Sources for LOC101928782 Gene

Content
Loading form....