Aliases for LOC101928718 Gene

Subcategory (RNA class) for LOC101928718 Gene

lncRNA

Number of RNA Genes sources:

1 / 17

Aliases for LOC101928718 Gene

  • Uncharacterized LOC101928718 3
  • Lnc-FAM212B-5 165

External Ids for LOC101928718 Gene

Previous GeneCards Identifiers for LOC101928718 Gene

  • GC01U903692

Summaries for LOC101928718 Gene

GeneCards Summary for LOC101928718 Gene

LOC101928718 (Uncharacterized LOC101928718) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC101928718 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC101928718 Gene

Genomics for LOC101928718 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC101928718 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J111754 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE CraniofacialAtlas 600.7 -0.4 -408 3 BRCA1 ARHGAP35 SP1 CREB1 GATAD2A CTCF HNRNPL PRDM10 ZNF629 RFX1 DDX20 ENSG00000284830 LOC101928718 INKA2 ST7L DENND2D CAPZA1 INKA2-AS1 lnc-FAM212B-3 KCND3
GH01J111755 Promoter 0.3 Ensembl 600.7 +1.4 1408 0.2 DDX20 ENSG00000284830 LOC101928718 INKA2 lnc-FAM212B-2 TMIGD3
GH01J111745 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 0.4 +7.6 7608 5 SP1 CREB1 CTCF TEAD4 ZNF629 RFX1 RFX5 KDM1A JUND MTA2 ST7L DDX20 ENSG00000243960 CEPT1 DRAM2 WNT2B INKA2-AS1 INKA2 ENSG00000284830 LOC101928718
GH01J111750 Enhancer 0.6 Ensembl ENCODE dbSUPER 0.7 +3.7 3747 2.1 MCM5 CEPT1 DRAM2 DDX20 CAPZA1 INKA2-AS1 ENSG00000284830 LOC101928718 INKA2 lnc-FAM212B-2 TMIGD3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC101928718 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC101928718 Gene

Genomic Locations for LOC101928718 Gene
chr1:111,745,317-111,755,509
(GRCh38/hg38)
Size:
10,193 bases
Orientation:
Minus strand

Genomic View for LOC101928718 Gene

Genes around LOC101928718 on UCSC Golden Path with GeneCards custom track
LOC101928718 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LOC101928718 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101928718 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC101928718 Gene

Proteins for LOC101928718 Gene

Post-translational modifications for LOC101928718 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101928718 Gene

Domains & Families for LOC101928718 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC101928718 Gene

Function for LOC101928718 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101928718 Gene

Localization for LOC101928718 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101928718 Gene

Pathways & Interactions for LOC101928718 Gene

PathCards logo

SuperPathways for LOC101928718 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC101928718 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC101928718 Gene

Drugs & Compounds for LOC101928718 Gene

No Compound Related Data Available

Transcripts for LOC101928718 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC101928718 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00007E4609_9606 lncRNA 2767 2

RefSeq: NR_125963,

LNCipedia: lnc-FAM212B-5:3,

LOC101928718 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC101928718 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101928718 Gene

No ASD Table

Relevant External Links for LOC101928718 Gene

GeneLoc Exon Structure for
LOC101928718

Expression for LOC101928718 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC101928718

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101928718 Gene

Orthologs for LOC101928718 Gene

No data available for Orthologs and Evolution for LOC101928718 Gene

Paralogs for LOC101928718 Gene

No data available for Paralogs for LOC101928718 Gene

Variants for LOC101928718 Gene

Additional dbSNP identifiers (rs#s) for LOC101928718 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC101928718 Gene

Disorders for LOC101928718 Gene

No disorders were found for LOC101928718 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC101928718 Gene

Publications for LOC101928718 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

No data available for Mastermind for LOC101928718 Gene

Products for LOC101928718 Gene

Sources for LOC101928718 Gene