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Aliases for LOC101928696 Gene

Subcategory (RNA class) for LOC101928696 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC101928696 Gene

  • Uncharacterized LOC101928696 3
  • Novel Transcript 5
  • Z99127.1 5

External Ids for LOC101928696 Gene

Previous GeneCards Identifiers for LOC101928696 Gene

  • GC01U903712

Summaries for LOC101928696 Gene

GeneCards Summary for LOC101928696 Gene

LOC101928696 (Uncharacterized LOC101928696) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC101928696 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC101928696 Gene

Genomics for LOC101928696 Gene

GeneHancer (GH) Regulatory Elements for LOC101928696 Gene

Promoters and enhancers for LOC101928696 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J174952 Promoter/Enhancer 1.6 Ensembl ENCODE dbSUPER 605.6 -0.1 -72 4.4 SP1 CEBPG NFIB MLLT1 ZBED1 IKZF1 RFX1 IKZF2 CEBPA GATAD2A LOC101928696 RABGAP1L RNU6-307P
GH01J174996 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 8 -45.3 -45303 6.8 ZFX ELF3 CC2D1A CTCF ZKSCAN8 MNT SIX5 CBFA2T2 ZNF148 NKRF LOC105371622 CACYBP RC3H1 LOC101928696 RNU6-307P PIR47281
GH01J175022 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 8.1 -68.9 -68948 2.4 HDGF ZFX SP1 CC2D1A ELF3 SIX5 POLR2A MLLT1 RERE GTF2F1 MRPS14 GC01M175022 ENSG00000206659 RABGAP1L LOC101928696
GH01J175014 Enhancer 0.7 ENCODE dbSUPER 7.9 -61.6 -61552 2.4 PKNOX1 ZSCAN5C TSHZ1 CEBPB HIC1 ZBTB33 ZNF362 RABGAP1L LOC101928696 MRPS14 ENSG00000206659 GC01M175022 PIR47281
GH01J175003 Enhancer 0.6 dbSUPER 8 -52.0 -52006 5.8 MLLT1 POLR2A NR2C2 ZNF189 BCOR MNT ZFP91 BHLHE40 PRDM6 PRDM10 PIR47281 RABGAP1L LOC101928696 CACYBP ENSG00000206659 GC01M175022
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC101928696 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC101928696 Gene

Genomic Locations for LOC101928696 Gene
chr1:174,934,947-174,954,261
(GRCh38/hg38)
Size:
19,315 bases
Orientation:
Minus strand
chr1:174,904,084-174,923,398
(GRCh37/hg19)
Size:
19,315 bases
Orientation:
Minus strand

Genomic View for LOC101928696 Gene

Genes around LOC101928696 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC101928696 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101928696 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC101928696 Gene

Proteins for LOC101928696 Gene

Post-translational modifications for LOC101928696 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101928696 Gene

Domains & Families for LOC101928696 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC101928696 Gene

Function for LOC101928696 Gene

Phenotypes From GWAS Catalog for LOC101928696 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101928696 Gene

Localization for LOC101928696 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101928696 Gene

Pathways & Interactions for LOC101928696 Gene

PathCards logo

SuperPathways for LOC101928696 Gene

No Data Available

Interacting Proteins for LOC101928696 Gene

Gene Ontology (GO) - Biological Process for LOC101928696 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC101928696 Gene

Drugs & Compounds for LOC101928696 Gene

No Compound Related Data Available

Transcripts for LOC101928696 Gene

mRNA/cDNA for LOC101928696 Gene

(2) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(2) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101928696 Gene

No ASD Table

Relevant External Links for LOC101928696 Gene

GeneLoc Exon Structure for
LOC101928696

Expression for LOC101928696 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101928696 Gene

Orthologs for LOC101928696 Gene

Evolution for LOC101928696 Gene

ENSEMBL:
Gene Tree for LOC101928696 (if available)
TreeFam:
Gene Tree for LOC101928696 (if available)

No data available for Orthologs for LOC101928696 Gene

Paralogs for LOC101928696 Gene

No data available for Paralogs for LOC101928696 Gene

Variants for LOC101928696 Gene

Sequence variations from dbSNP and Humsavar for LOC101928696 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000333699 -- 174,943,217(-) C/T intron_variant
rs1000409337 -- 174,939,699(-) A/G intron_variant
rs1001068256 -- 174,955,247(-) AGACA/AGACAGACA upstream_transcript_variant
rs1001144995 -- 174,952,289(-) C/A intron_variant
rs1001269751 -- 174,952,412(-) A/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC101928696 Gene

Variant ID Type Subtype PubMed ID
esv1344689 CNV insertion 17803354
nsv512750 CNV insertion 21212237

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC101928696 Gene

Disorders for LOC101928696 Gene

No disorders were found for LOC101928696 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC101928696 Gene

Publications for LOC101928696 Gene

No publications were found for LOC101928696 Gene.

No data available for External Links for LOC101928696 Gene

Products for LOC101928696 Gene

Sources for LOC101928696 Gene

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