Aliases for LOC101928663 Gene

Data sources for LOC101928663 Gene:

Subcategory (RNA class) for LOC101928663 Gene

lncRNA

Aliases for LOC101928663 Gene

External Ids for LOC101928663 Gene

Previous GeneCards Identifiers for LOC101928663 Gene

  • GC06U902443

Summaries for LOC101928663 Gene

GeneCards Summary for LOC101928663 Gene

LOC101928663 (Uncharacterized LOC101928663) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC101928663 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC101928663 Gene

Genomics for LOC101928663 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC101928663 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J025451 Promoter 0.3 Ensembl 250.7 +0.5 483 1.4 CMAHP HSALNG0048676 LOC101928663 CARMIL1 SLC17A4 ENSG00000272810 RF00994-895 SCGN
GH06J025447 Enhancer 0.6 ENCODE 0.7 +4.2 4234 1.6 KLF9 ELF1 IKZF1 NR2F1 ATF2 ATF7 SPI1 EGR2 IKZF2 MTA2 CARMIL1 SCGN CMAHP HSALNG0048676 LOC101928663 RF00994-895
GH06J025403 Promoter/Enhancer 1.4 EPDnew FANTOM5 ENCODE dbSUPER 0.3 +46.2 46198 5.5 SP1 BCL11A IRF4 SMARCA5 SPI1 BATF ZNF189 ZNF24 ELF1 SCRT1 CARMIL1 lnc-SCGN-3 RF00017-5373 CMAHP HSALNG0048676 LOC101928663 SCGN
GH06J025441 Enhancer 0.7 Ensembl ENCODE 0.4 +9.5 9483 3.4 FEZF1 GABPB1 PKNOX1 ZSCAN4 ZNF629 ZNF692 OSR2 ZNF600 CARMIL1 RPL21P68 BTN3A2 RF00994-895 lnc-SCGN-6 CMAHP HSALNG0048676 LOC101928663 SCGN
GH06J025412 Enhancer 0.8 Ensembl dbSUPER 0.3 +38.1 38083 10.2 FEZF1 RFX5 ZNF843 PRDM6 SCRT1 IKZF1 GLIS1 PRDM4 ZNF366 PKNOX1 CARMIL1 BTN3A2 ALDH5A1 SCGN lnc-SCGN-3 piR-35002-052 HSALNG0048676 LOC101928663 CMAHP
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC101928663 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC101928663 Gene

Latest Assembly
chr6:25,244,835-25,452,184
(GRCh38/hg38)
Size:
207,350 bases
Orientation:
Minus strand

Previous Assembly
chr6:25,245,144-25,261,635
(GRCh37/hg19 by Entrez Gene)
Size:
16,492 bases
Orientation:
Minus strand

Genomic View for LOC101928663 Gene

Genes around LOC101928663 on UCSC Golden Path with GeneCards custom track
LOC101928663 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LOC101928663 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101928663 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC101928663 Gene

Proteins for LOC101928663 Gene

Post-translational modifications for LOC101928663 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101928663 Gene

Domains & Families for LOC101928663 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC101928663 Gene

Function for LOC101928663 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101928663 Gene

Localization for LOC101928663 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101928663 Gene

Pathways & Interactions for LOC101928663 Gene

PathCards logo

SuperPathways for LOC101928663 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC101928663 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC101928663 Gene

Drugs & Compounds for LOC101928663 Gene

No Compound Related Data Available

Transcripts for LOC101928663 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC101928663 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075E977_9606 lncRNA 1179 1

RefSeq: NR_110862,

URS000075D312_9606 lncRNA 1061 1

RefSeq: NR_110863,

URS00008BA167_9606 lncRNA 1186 3

LncBook: HSALNT0102733,

LNCipedia: lnc-RIPOR2-21:3,

NONCODE: NONHSAT108146.2,

URS00009AD9EA_9606 lncRNA 1063 3

LncBook: HSALNT0102734,

LNCipedia: lnc-RIPOR2-21:7,

NONCODE: NONHSAT208896.1,

URS00008B76CD_9606 lncRNA 746 2

LNCipedia: lnc-RIPOR2-21:1,

NONCODE: NONHSAT108147.2,

LOC101928663 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC101928663 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101928663 Gene

No ASD Table

Relevant External Links for LOC101928663 Gene

GeneLoc Exon Structure for
LOC101928663

Expression for LOC101928663 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC101928663 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC101928663

genes like me logo Genes that share expression patterns with LOC101928663: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101928663 Gene

Orthologs for LOC101928663 Gene

No data available for Orthologs and Evolution for LOC101928663 Gene

Paralogs for LOC101928663 Gene

No data available for Paralogs for LOC101928663 Gene

Variants for LOC101928663 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LOC101928663 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for LOC101928663 Gene

Variant ID Type Subtype PubMed ID
nsv1025694 CNV gain 25217958
nsv970080 CNV duplication 23825009

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Variation tolerance and Additional Variant Information for LOC101928663 Gene

Disorders for LOC101928663 Gene

No disorders were found for LOC101928663 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC101928663 Gene

Publications for LOC101928663 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

No data available for Mastermind for LOC101928663 Gene

Products for LOC101928663 Gene

Sources for LOC101928663 Gene