LOC101928663 Gene (RNA Gene)

Uncharacterized LOC101928663

GC06M025244
GIFtS:
9
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Aliases for LOC101928663 Gene

Subcategory (RNA class) for LOC101928663 Gene

lncRNA

Number of RNA Genes sources:

4 / 17

Aliases for LOC101928663 Gene

  • Uncharacterized LOC101928663 3
  • NONHSAG043201.2 91
  • HSALNG0048668 164
  • Lnc-RIPOR2-21 165

External Ids for LOC101928663 Gene

Previous GeneCards Identifiers for LOC101928663 Gene

  • GC06U902443

Summaries for LOC101928663 Gene

GeneCards Summary for LOC101928663 Gene

LOC101928663 (Uncharacterized LOC101928663) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC101928663 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC101928663 Gene

Genomics for LOC101928663 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for LOC101928663 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH06J025451 Promoter 0.5 Ensembl 600.7 +0.3 283 1.8 SCRT2 PCBP1 CMAHP LOC101928663 CARMIL1 SLC17A4 ENSG00000272462 ENSG00000272810 RF00994-895 SCGN
GH06J025447 Enhancer 0.6 ENCODE 0.7 +4.2 4234 1.6 IKZF2 PKNOX1 KLF9 ELF1 ZFHX2 IKZF1 NR2F1 TBX21 ATF7 ATF2 CARMIL1 SCGN CMAHP LOC101928663 RF00994-895
GH06J025403 Promoter/Enhancer 1.5 EPDnew FANTOM5 ENCODE dbSUPER 0.3 +46.2 46198 5.5 SP1 ATF7 BACH1 TCF12 IKZF2 PKNOX1 SCRT2 EED DPF2 RELB CARMIL1 lnc-SCGN-3 RF00017-5375 CMAHP LOC101928663 SCGN
GH06J025278 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 0.1 +172.5 172497 3.8 BRCA1 ARHGAP35 CTCF HNRNPL PRDM10 ZNF629 ZNF692 ZHX2 LARP7 PRDM1 CARMIL1 HSALNG0048671 TDP2 ENSG00000207286 CMAHP LOC101928663 SCGN
GH06J025446 Enhancer 0.5 ENCODE 0.4 +5.2 5156 0.2 CREB1 ELF1 TBX21 ATF7 ATF2 MTA2 RF00994-895 CMAHP LOC101928663 CARMIL1 SCGN
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC101928663 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC101928663 Gene

Genomic Locations for LOC101928663 Gene
chr6:25,244,911-25,452,184
(GRCh38/hg38)
Size:
207,274 bases
Orientation:
Minus strand
chr6:25,245,584-25,261,639
(GRCh37/hg19)
Size:
16,056 bases
Orientation:
Minus strand

Genomic View for LOC101928663 Gene

Genes around LOC101928663 on UCSC Golden Path with GeneCards custom track
LOC101928663 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LOC101928663 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101928663 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LOC101928663 Gene

Proteins for LOC101928663 Gene

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Post-translational modifications for LOC101928663 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101928663 Gene

Domains & Families for LOC101928663 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC101928663 Gene

Function for LOC101928663 Gene

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  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for LOC101928663 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101928663 Gene

Localization for LOC101928663 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101928663 Gene

Pathways & Interactions for LOC101928663 Gene

PathCards logo

SuperPathways for LOC101928663 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC101928663 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC101928663 Gene

Drugs & Compounds for LOC101928663 Gene

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  1. Drug
No Compound Related Data Available

Transcripts for LOC101928663 Gene

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  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC101928663 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075E977_9606 lncRNA 1179 1

RefSeq: NR_110862,

URS000075D312_9606 lncRNA 1061 1

RefSeq: NR_110863,

URS00008BA167_9606 lncRNA 1186 3

LncBook: HSALNT0102733,

LNCipedia: lnc-RIPOR2-21:3,

NONCODE: NONHSAT108146.2,

URS00009AD9EA_9606 lncRNA 1063 3

LncBook: HSALNT0102734,

LNCipedia: lnc-RIPOR2-21:7,

NONCODE: NONHSAT208896.1,

URS00008B76CD_9606 lncRNA 746 2

LNCipedia: lnc-RIPOR2-21:1,

NONCODE: NONHSAT108147.2,

LOC101928663 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC101928663 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101928663 Gene

No ASD Table

Relevant External Links for LOC101928663 Gene

GeneLoc Exon Structure for
LOC101928663

Expression for LOC101928663 Gene

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  1. Primer
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mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC101928663 Gene

mRNA expression in normal human tissues for LOC101928663 Gene
mRNA expression by GTEx for LOC101928663 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC101928663

genes like me logo Genes that share expression patterns with LOC101928663: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101928663 Gene

Orthologs for LOC101928663 Gene

No data available for Orthologs and Evolution for LOC101928663 Gene

Paralogs for LOC101928663 Gene

No data available for Paralogs for LOC101928663 Gene

Variants for LOC101928663 Gene

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  1. SNP Genotyping and Copy Number Assay

Additional dbSNP identifiers (rs#s) for LOC101928663 Gene

Structural Variations from Database of Genomic Variants (DGV) for LOC101928663 Gene

Variant ID Type Subtype PubMed ID
nsv1025694 CNV gain 25217958
nsv970080 CNV duplication 23825009

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Variation tolerance and Additional Variant Information for LOC101928663 Gene

Disorders for LOC101928663 Gene

No disorders were found for LOC101928663 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC101928663 Gene

Publications for LOC101928663 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

No data available for Mastermind for LOC101928663 Gene

Products for LOC101928663 Gene

Sources for LOC101928663 Gene