Aliases for LOC101928659 Gene

Subcategory (RNA class) for LOC101928659 Gene

lncRNA

Quality Score for this RNA gene is

14

Aliases for LOC101928659 Gene

  • Uncharacterized LOC101928659 3
  • Novel Transcript, Antisense To FBXO31 And C16orf95 Readthrough 5
  • Lnc-MAP1LC3B-1 170
  • NONHSAG020243 94
  • AC010531.6 5

External Ids for LOC101928659 Gene

Previous GeneCards Identifiers for LOC101928659 Gene

  • GC16U901623

Summaries for LOC101928659 Gene

GeneCards Summary for LOC101928659 Gene

LOC101928659 (Uncharacterized LOC101928659) is an RNA Gene, and is affiliated with the lncRNA class.

Rfam classification for LOC101928659 Gene

  • Metazoan signal recognition particle RNA

Additional gene information for LOC101928659 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for LOC101928659 Gene

Genomics for LOC101928659 Gene

GeneHancer (GH) Regulatory Elements for LOC101928659 Gene

Promoters and enhancers for LOC101928659 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J087316 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 750.6 +0.2 201 2.8 ZNF785 SP1 CTCF SMARCE1 RBPJ POLR2A ATF1 FOS CREB1 MIXL1 C16orf95 LOC101928659 lnc-C16orf95-2-001 MTHFSD BANP ZCCHC14 ENSG00000269901 RF00017-2185 ENSG00000131152
GH16J086950 Enhancer 1.7 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 28.5 -364.7 -364722 3.8 ZNF785 SIX5 LCORL POLR2A TRIM22 MTA3 NFIB IKZF1 ZNF148 MLLT1 MTHFSD ZCCHC14 LOC101928659 BANP KLHDC4 LINC02181 FOXC2 FOXL1 HSALNG0113353 ENSG00000287161
GH16J087777 Promoter/Enhancer 2.3 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 18.2 +462.3 462265 4.2 ZNF785 SIN3A ZNF24 SP1 CTCF SREBF1 MLX RBPJ CTBP1 USF2 KLHDC4 ENSG00000260498 LOC102724467 ZC3H18 BANP LOC100289580 LOC101928659 ZCCHC14 ENSG00000260121 LOC100129215
GH16J086491 Promoter/Enhancer 2.1 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 18.2 -812.6 -812585 28.1 ZNF785 CTCF POLR2A CTBP1 MYC CC2D1A MAX RAD21 MNT SP1 FOXF1 MTHFSD ENSG00000261697 LOC101928659 ENSG00000269826 ENSG00000261177 ENSG00000243705 ENSG00000269898 C16orf95 LINC00917
GH16J086928 Enhancer 1.5 Ensembl ENCODE CraniofacialAtlas dbSUPER 20.2 -386.9 -386876 4.9 SP1 ZBTB40 SMARCE1 TRIM22 RUNX1 ZNF133 ZNF701 TEAD4 ZKSCAN8 IKZF1 lnc-C16orf95-1 MTHFSD ZCCHC14 ENSG00000261697 LOC101928659 ENSG00000243705 ENSG00000269826 ENSG00000261177 ENSG00000260177 C16orf95
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC101928659 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC101928659 Gene

Genomic Locations for LOC101928659 Gene
chr16:87,317,422-87,325,351
(GRCh38/hg38)
Size:
7,930 bases
Orientation:
Plus strand
chr16:87,351,115-87,351,643
(GRCh37/hg19)
Size:
529 bases
Orientation:
Plus strand

Genomic View for LOC101928659 Gene

Genes around LOC101928659 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC101928659 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101928659 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC101928659 Gene

Proteins for LOC101928659 Gene

Post-translational modifications for LOC101928659 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101928659 Gene

Domains & Families for LOC101928659 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC101928659 Gene

Function for LOC101928659 Gene

Phenotypes From GWAS Catalog for LOC101928659 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101928659 Gene

Localization for LOC101928659 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101928659 Gene

Pathways & Interactions for LOC101928659 Gene

PathCards logo

SuperPathways for LOC101928659 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC101928659 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC101928659 Gene

Drugs & Compounds for LOC101928659 Gene

No Compound Related Data Available

Transcripts for LOC101928659 Gene

mRNA/cDNA for LOC101928659 Gene

(1) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(10) RNACentral transcripts :
(3) NONCODE transcripts :
(10) LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101928659 Gene

No ASD Table

Relevant External Links for LOC101928659 Gene

GeneLoc Exon Structure for
LOC101928659

Expression for LOC101928659 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC101928659 Gene

mRNA differential expression in normal tissues according to GTEx for LOC101928659 Gene

This gene is overexpressed in Pituitary (x4.6).
genes like me logo Genes that share expression patterns with LOC101928659: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101928659 Gene

Orthologs for LOC101928659 Gene

Evolution for LOC101928659 Gene

ENSEMBL:
Gene Tree for LOC101928659 (if available)
TreeFam:
Gene Tree for LOC101928659 (if available)

No data available for Orthologs for LOC101928659 Gene

Paralogs for LOC101928659 Gene

No data available for Paralogs for LOC101928659 Gene

Variants for LOC101928659 Gene

Sequence variations from dbSNP and Humsavar for LOC101928659 Gene

SNP ID Clin Chr 16 pos Variation AA Info Type
rs1000128223 -- 87,316,262(+) C/T upstream_transcript_variant
rs1000757766 -- 87,316,627(+) C/A upstream_transcript_variant
rs1001037588 -- 87,317,840(+) C/A intron_variant
rs1001985080 -- 87,315,696(+) C/A upstream_transcript_variant
rs1002475980 -- 87,317,030(+) G/C upstream_transcript_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC101928659 Gene

Disorders for LOC101928659 Gene

No disorders were found for LOC101928659 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC101928659 Gene

Publications for LOC101928659 Gene

  1. Expressed sequence tag analysis of human retina for the NEIBank Project: retbindin, an abundant, novel retinal cDNA and alternative splicing of other retina-preferred gene transcripts. (PMID: 12107411) Wistow G … Peterson K (Molecular vision 2002) 3 56

No data available for External Links for LOC101928659 Gene

Products for LOC101928659 Gene

Sources for LOC101928659 Gene