Free for academic non-profit institutions. Other users need a Commercial license

Aliases for LOC101928617 Gene

Subcategory (RNA class) for LOC101928617 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC101928617 Gene

  • Uncharacterized LOC101928617 3
  • AC025164.1 5

External Ids for LOC101928617 Gene

Previous GeneCards Identifiers for LOC101928617 Gene

  • GC12U901706

Summaries for LOC101928617 Gene

GeneCards Summary for LOC101928617 Gene

LOC101928617 (Uncharacterized LOC101928617) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC101928617 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC101928617 Gene

Genomics for LOC101928617 Gene

GeneHancer (GH) Regulatory Elements for LOC101928617 Gene

Promoters and enhancers for LOC101928617 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J092028 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 11.5 -112.6 -112622 8 HDGF PKNOX1 FOXA2 SMAD1 MLX ARID4B SIN3A FEZF1 DMAP1 YBX1 BTG1 LOC101928617 CLLU1 GC12P092067 LOC105369901 LINC01619
GH12J092549 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 10.7 +409.3 409263 10.5 HDGF PKNOX1 SMAD1 IRF4 YY1 ZNF207 ZNF143 ATF7 FOS RUNX3 BTG1 LOC101928617 EEA1 LOC105369905 LOC100132126
GH12J092561 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 11.1 +416.1 416146 1.3 FOXA2 SMAD1 RAD21 YY1 EGR1 ZNF143 ATF7 IKZF2 RUNX3 SMARCA5 BTG1 LOC101928617 LOC105369905 C12orf74
GH12J092207 Enhancer 1.2 Ensembl ENCODE dbSUPER 10.8 +63.8 63764 3.2 HDAC1 PKNOX1 ZBTB40 TCF12 ATF7 IKZF2 RUNX3 CREM JUNB ZNF217 LOC101928617 BTG1 GC12M092217 GC12M092171 ENSG00000199895 LINC02391
GH12J092184 Enhancer 1.1 Ensembl ENCODE dbSUPER 11.4 +40.6 40615 3.4 BATF IRF4 RELA EED ZNF143 ETV6 BCLAF1 IKZF2 RUNX3 CREM BTG1 LOC101928617 ENSG00000199895 GC12M092171 GC12M092217 LINC02391
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC101928617 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC101928617 Gene

Genomic Locations for LOC101928617 Gene
chr12:92,145,573-92,189,660
(GRCh38/hg38)
Size:
44,088 bases
Orientation:
Plus strand

Genomic View for LOC101928617 Gene

Genes around LOC101928617 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC101928617 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101928617 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC101928617 Gene

Proteins for LOC101928617 Gene

Post-translational modifications for LOC101928617 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101928617 Gene

Domains & Families for LOC101928617 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC101928617 Gene

Function for LOC101928617 Gene

Phenotypes From GWAS Catalog for LOC101928617 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101928617 Gene

Localization for LOC101928617 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101928617 Gene

Pathways & Interactions for LOC101928617 Gene

SuperPathways for LOC101928617 Gene

No Data Available

Interacting Proteins for LOC101928617 Gene

Gene Ontology (GO) - Biological Process for LOC101928617 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC101928617 Gene

Drugs & Compounds for LOC101928617 Gene

No Compound Related Data Available

Transcripts for LOC101928617 Gene

mRNA/cDNA for LOC101928617 Gene

(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(2) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101928617 Gene

No ASD Table

Relevant External Links for LOC101928617 Gene

GeneLoc Exon Structure for
LOC101928617

Expression for LOC101928617 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC101928617 Gene

genes like me logo Genes that share expression patterns with LOC101928617: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101928617 Gene

Orthologs for LOC101928617 Gene

Evolution for LOC101928617 Gene

ENSEMBL:
Gene Tree for LOC101928617 (if available)
TreeFam:
Gene Tree for LOC101928617 (if available)

No data available for Orthologs for LOC101928617 Gene

Paralogs for LOC101928617 Gene

No data available for Paralogs for LOC101928617 Gene

Variants for LOC101928617 Gene

Sequence variations from dbSNP and Humsavar for LOC101928617 Gene

SNP ID Clin Chr 12 pos Variation AA Info Type
rs1000056530 -- 92,170,522(+) T/C genic_downstream_transcript_variant, intron_variant
rs1000108362 -- 92,170,991(+) A/G genic_downstream_transcript_variant, intron_variant
rs1000177691 -- 92,154,219(+) T/C intron_variant
rs1000247244 -- 92,144,120(+) C/G upstream_transcript_variant
rs1000467665 -- 92,183,844(+) T/C genic_downstream_transcript_variant, intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC101928617 Gene

Disorders for LOC101928617 Gene

Additional Disease Information for LOC101928617

No disorders were found for LOC101928617 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC101928617 Gene

Publications for LOC101928617 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for LOC101928617 Gene

Sources for LOC101928617 Gene

Content
Loading form....