Aliases for LOC101928596 Gene

Subcategory (RNA class) for LOC101928596 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LOC101928596 Gene

  • Uncharacterized LOC101928596 3
  • Novel Transcript 5
  • NONHSAG003408.2 91
  • HSALNG0008317 164
  • Lnc-ATP1B1-1 165
  • AL031726.1 5

External Ids for LOC101928596 Gene

Previous GeneCards Identifiers for LOC101928596 Gene

  • GC01U903796
  • GC01P169076

Summaries for LOC101928596 Gene

GeneCards Summary for LOC101928596 Gene

LOC101928596 (Uncharacterized LOC101928596) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC101928596 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC101928596 Gene

Genomics for LOC101928596 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC101928596 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J169141 Enhancer 1.3 Ensembl ENCODE dbSUPER 10.7 +42.7 42706 10.1 GATAD2A TFE3 SOX13 RCOR2 BACH1 RXRB IRF2 IKZF2 SP1 GABPA NME7 ATP1B1 LOC101928596 piR-57724 lnc-NME7-2 BLZF1
GH01J169132 Enhancer 1.1 UCNEbase Ensembl dbSUPER 11.4 +29.0 28978 2.2 POLR2A TRIM22 RAD21 RBM22 CTCF FOSL2 NR2F1 SSRP1 TBX21 FOS NME7 ATP1B1 LOC101928596 piR-57724 lnc-NME7-2 BLZF1
GH01J169308 Promoter/Enhancer 1.2 Ensembl ENCODE 9.8 +205.2 205228 1.9 ZNF512 RFX1 LEF1 JUND MTA2 PKNOX1 REST ZNF24 DPF2 HDAC1 ENSG00000235575 NME7 RN7SL333P METTL18 C1orf112 SCYL3 DPT LOC101928596 ATP1B1 lnc-CCDC181-2
GH01J168465 Enhancer 1.3 FANTOM5 Ensembl ENCODE 8.8 -635.5 -635456 6.5 PRDM10 ZNF629 LEF1 IKZF1 ZNF692 JUND LARP7 STAT3 MTA2 PKNOX1 ATP1B1 LOC101928596 QRSL1P1 ENSG00000228697 LOC101928565 XCL2 TBX19
GH01J168612 Enhancer 1.1 ENCODE CraniofacialAtlas dbSUPER 10.3 -490.2 -490211 2.6 ZNF629 ZIC2 ZSCAN4 PKNOX1 POLR2A PATZ1 ZNF501 ZNF341 ZNF561 ZBTB44 ATP1B1 LOC101928596 DCAF6 HSALNG0008296 RPL7AP21 XCL1 DPT
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC101928596 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC101928596 Gene

Genomic Locations for LOC101928596 Gene
chr1:169,104,123-169,104,908
(GRCh38/hg38)
Size:
786 bases
Orientation:
Plus strand
chr1:169,073,362-169,074,145
(GRCh37/hg19)
Size:
784 bases
Orientation:
Plus strand

Genomic View for LOC101928596 Gene

Genes around LOC101928596 on UCSC Golden Path with GeneCards custom track
LOC101928596 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LOC101928596 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101928596 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC101928596 Gene

Proteins for LOC101928596 Gene

Post-translational modifications for LOC101928596 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101928596 Gene

Domains & Families for LOC101928596 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC101928596 Gene

Function for LOC101928596 Gene

Phenotypes From GWAS Catalog for LOC101928596 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101928596 Gene

Localization for LOC101928596 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101928596 Gene

Pathways & Interactions for LOC101928596 Gene

PathCards logo

SuperPathways for LOC101928596 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC101928596 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC101928596 Gene

Drugs & Compounds for LOC101928596 Gene

No Compound Related Data Available

Transcripts for LOC101928596 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC101928596 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00004FBB1C_9606 lncRNA 568 4

Ensembl: ENST00000415637 (view in UCSC) ,

LncBook: HSALNT0017235,

LNCipedia: lnc-ATP1B1-1:1,

NONCODE: NONHSAT007455.2,

URS0000A773AD_9606 lncRNA 567 1

RefSeq: NR_135799,

URS00008BD471_9606 lncRNA 570 3

LncBook: HSALNT0017233,

LNCipedia: lnc-ATP1B1-1:2,

NONCODE: NONHSAT007454.2,

URS00009B3E16_9606 lncRNA 568 2

LncBook: HSALNT0017236,

NONCODE: NONHSAT150028.1,

LOC101928596 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC101928596 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101928596 Gene

No ASD Table

Relevant External Links for LOC101928596 Gene

GeneLoc Exon Structure for
LOC101928596

Expression for LOC101928596 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC101928596 Gene

mRNA differential expression in normal tissues according to GTEx for LOC101928596 Gene

This gene is overexpressed in Kidney - Cortex (x35.3).
genes like me logo Genes that share expression patterns with LOC101928596: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101928596 Gene

Orthologs for LOC101928596 Gene

Evolution for LOC101928596 Gene

ENSEMBL:
Gene Tree for LOC101928596 (if available)
TreeFam:
Gene Tree for LOC101928596 (if available)

No data available for Orthologs for LOC101928596 Gene

Paralogs for LOC101928596 Gene

No data available for Paralogs for LOC101928596 Gene

Variants for LOC101928596 Gene

Additional dbSNP identifiers (rs#s) for LOC101928596 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC101928596 Gene

Disorders for LOC101928596 Gene

No disorders were found for LOC101928596 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC101928596 Gene

Publications for LOC101928596 Gene

  1. Impact of ancestry and common genetic variants on QT interval in African Americans. (PMID: 23166209) Smith JG … CARe and COGENT consortia (Circulation. Cardiovascular genetics 2012) 3

No data available for Mastermind for LOC101928596 Gene

Products for LOC101928596 Gene

Sources for LOC101928596 Gene