LOC101928595 Gene (RNA Gene)

Uncharacterized LOC101928595

GC16P030144
GIFtS:
7
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Aliases for LOC101928595 Gene

Subcategory (RNA class) for LOC101928595 Gene

lncRNA

Number of RNA Genes sources:

1 / 17

Aliases for LOC101928595 Gene

  • Uncharacterized LOC101928595 3
  • NONHSAG019074.2 91

External Ids for LOC101928595 Gene

Previous GeneCards Identifiers for LOC101928595 Gene

  • GC16U901563
  • GC16P030109

Summaries for LOC101928595 Gene

GeneCards Summary for LOC101928595 Gene

LOC101928595 (Uncharacterized LOC101928595) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC101928595 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC101928595 Gene

Genomics for LOC101928595 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for LOC101928595 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH16J030089 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 0.7 -2.4 -2420 9.2 ZNF221 HNRNPL CREB1 GATAD2A CTCF ZBTB33 TEAD4 PRDM10 ZNF629 REST YPEL3 TBX6 lnc-PPP4C-2 SRCAP INO80E SMG1P2 SMG1P5 BCL7C PRR14 ZNF764
GH16J030102 Enhancer 1 Ensembl ENCODE 0.4 +7.5 7497 3 CREB1 TARDBP ZHX2 POLR2A GTF2F1 ATF7 SCRT2 ZNF512B RFX1 DDX20 YPEL3 PPP4C TBC1D10B ENSG00000261367 lnc-GDPD3-1 ENSG00000250616 GDPD3 LOC101928595
GH16J030100 Enhancer 0.3 Ensembl 0.7 +3.8 3771 0.4 ZSCAN4 ENSG00000250616 LOC101928595 YPEL3 ENSG00000261367 GDPD3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC101928595 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC101928595 Gene

Genomic Locations for LOC101928595 Gene
chr16:30,096,430-30,105,456
(GRCh38/hg38)
Size:
9,027 bases
Orientation:
Plus strand
chr16:30,107,751-30,115,437
(GRCh37/hg19)
Size:
7,687 bases
Orientation:
Plus strand

Genomic View for LOC101928595 Gene

Genes around LOC101928595 on UCSC Golden Path with GeneCards custom track
LOC101928595 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LOC101928595 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101928595 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LOC101928595 Gene

Proteins for LOC101928595 Gene

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  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for LOC101928595 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101928595 Gene

Domains & Families for LOC101928595 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC101928595 Gene

Function for LOC101928595 Gene

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  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for LOC101928595 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101928595 Gene

Localization for LOC101928595 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101928595 Gene

Pathways & Interactions for LOC101928595 Gene

PathCards logo

SuperPathways for LOC101928595 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC101928595 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC101928595 Gene

Drugs & Compounds for LOC101928595 Gene

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  1. Drug
No Compound Related Data Available

Transcripts for LOC101928595 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC101928595 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00009B123E_9606 lncRNA 2990 2

RefSeq: NR_135192,

NONCODE: NONHSAT141703.2,

LOC101928595 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC101928595 Gene

3 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101928595 Gene

No ASD Table

Relevant External Links for LOC101928595 Gene

GeneLoc Exon Structure for
LOC101928595

Expression for LOC101928595 Gene

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  1. Primer
  2. Gene Expression Assay

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC101928595 Gene

mRNA expression in normal human tissues for LOC101928595 Gene
mRNA expression by GTEx for LOC101928595 Gene

mRNA differential expression in normal tissues according to GTEx for LOC101928595 Gene

This gene is overexpressed in Whole Blood (x6.8).
genes like me logo Genes that share expression patterns with LOC101928595: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101928595 Gene

Orthologs for LOC101928595 Gene

No data available for Orthologs and Evolution for LOC101928595 Gene

Paralogs for LOC101928595 Gene

No data available for Paralogs for LOC101928595 Gene

Variants for LOC101928595 Gene

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  1. SNP Genotyping and Copy Number Assay

Additional dbSNP identifiers (rs#s) for LOC101928595 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC101928595 Gene

Disorders for LOC101928595 Gene

No disorders were found for LOC101928595 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC101928595 Gene

Publications for LOC101928595 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

No data available for Mastermind for LOC101928595 Gene

Products for LOC101928595 Gene

Sources for LOC101928595 Gene