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Aliases for LOC101928590 Gene
Subcategory (RNA class) for LOC101928590 Gene
lncRNA
Aliases for LOC101928590 Gene
External Ids for LOC101928590 Gene
- NCBI Entrez Gene: 101928590
- Ensembl: ENSG00000249106
Previous GeneCards Identifiers for LOC101928590 Gene
- GC04U901580
Summaries for LOC101928590 Gene
GeneCards Summary for LOC101928590 Gene
LOC101928590 (Uncharacterized LOC101928590) is an RNA Gene, and is affiliated with the lncRNA class.
Additional gene information for LOC101928590 Gene
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC101928590 Gene
Genomics for LOC101928590 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for LOC101928590 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH04J175786 | Enhancer | 0.2 | Ensembl | 250.7 | -1.7 | -1705 | 4.4 | HSALNG0038686 LOC101928590 GPM6A ADAM29 | ||
| GH04J175792 | Enhancer | 0.2 | Ensembl | 250.7 | +1.0 | 995 | 0.2 | LOC101928590 lnc-SPATA4-2 GPM6A ADAM29 | ||
| GH04J175813 | Promoter/Enhancer | 1.2 | EPDnew Ensembl ENCODE | 7.3 | +21.2 | 21195 | 5 | BCL11A CHD1 ATF2 ZSCAN4 ATF7 POLR2A PRDM10 RAD21 | lnc-SPATA4-2 GPM6A LOC101928590 SPCS3-AS1 ADAM29 | |
| GH04J175833 | Enhancer | 0.3 | Ensembl | 0.3 | +44.1 | 44095 | 1.6 | FOS | lnc-SPATA4-2 LOC101928590 ENSG00000248249 GPM6A | |
| GH04J175816 | Enhancer | 0.2 | FANTOM5 | 0.3 | +26.5 | 26452 | 0.2 | lnc-SPATA4-2 LOC101928590 ENSG00000248249 GPM6A ADAM29 |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around LOC101928590 on the GeneHancer Hub at the UCSC Golden Path
Genomic Locations for LOC101928590 Gene
Latest Assembly
- chr4:175,790,306-175,853,813
- (GRCh38/hg38)
- Size:
- 63,508 bases
- Orientation:
- Plus strand
Previous Assembly
- chr4:176,711,458-176,733,340
- (GRCh37/hg19 by Entrez Gene)
- Size:
- 21,883 bases
- Orientation:
- Plus strand
- chr4:176,711,458-176,733,340
- (GRCh37/hg19 by Ensembl)
- Size:
- 21,883 bases
- Orientation:
- Plus strand
Genomic View for LOC101928590 Gene
Genes around LOC101928590 on UCSC Golden Path with GeneCards custom track
LOC101928590 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
- Cytogenetic band:
-
- 4q34.2 by Entrez Gene
- 4q34.2 by Ensembl
LOC101928590 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for LOC101928590 Gene
Proteins for LOC101928590 Gene
Post-translational modifications for LOC101928590 Gene
No Post-translational modifications
No data available for DME Specific Peptides for LOC101928590 Gene
Domains & Families for LOC101928590 Gene
No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC101928590 Gene
Function for LOC101928590 Gene
Phenotypes From GWAS Catalog for LOC101928590 Gene
CRISPR products for research
Inhibitory RNAs for research
Clone products for research
Cell Lines for research
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101928590 Gene
Localization for LOC101928590 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101928590 Gene
Transcripts for LOC101928590 Gene
Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC101928590 Gene
| RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
|---|---|---|---|---|
| URS00000B5C51_9606 | lncRNA | 1213 | 4 |
RefSeq: NR_125901, Ensembl: ENST00000514864 (view in UCSC) , LNCipedia: lnc-WDR17-1:1, NONCODE: NONHSAT099345.2, |
| URS00008BCF0C_9606 | lncRNA | 658 | 3 |
LncBook: HSALNT0081223, LNCipedia: lnc-WDR17-1:2, NONCODE: NONHSAT099346.2, |
| URS00009BDDD3_9606 | lncRNA | 1547 | 2 |
LncBook: HSALNT0081220, NONCODE: NONHSAT199434.1, |
| URS00009B5422_9606 | lncRNA | 219 | 2 |
LncBook: HSALNT0081230, NONCODE: NONHSAT199435.1, |
| URS0001BF4712_9606 | lncRNA | 4502 | 1 |
LncBook: HSALNT0081224, |
LOC101928590 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
Additional transcripts not in RNAcentral for LOC101928590 Gene
- 1 NCBI additional mRNA sequence :
CRISPR products for research
Inhibitory RNAs for research
Clone products for research
Relevant External Links for LOC101928590 Gene
- GeneLoc Exon Structure for
- LOC101928590
Expression for LOC101928590 Gene
Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC101928590
Gene Expression Assays for research
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101928590 Gene
Orthologs for LOC101928590 Gene
No data available for Orthologs for LOC101928590 Gene
Paralogs for LOC101928590 Gene
No data available for Paralogs for LOC101928590 Gene
Variants for LOC101928590 Gene
All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).
| Variant ID | Type | Subtype | PubMed ID |
|---|---|---|---|
| esv3569837 | CNV | loss | 25503493 |
| esv3603268 | CNV | gain | 21293372 |
| esv3603269 | CNV | gain | 21293372 |
SNP Genotyping and Copy Number Assays for research
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Variation tolerance and Additional Variant Information for LOC101928590 Gene
Disorders for LOC101928590 Gene
Additional Disease Information for LOC101928590
- Open Targets Platform
- Open Targets Platform
No disorders were found for LOC101928590 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC101928590 Gene
Publications for LOC101928590 Gene
No publications were found for LOC101928590 Gene.
No data available for Mastermind for LOC101928590 Gene
Products for LOC101928590 Gene
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LOC101928590
- Origene Custom Protein Services for LOC101928590
- Browse OriGene Inhibitory RNA Products For LOC101928590
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for LOC101928590
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For LOC101928590
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for LOC101928590
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for LOC101928590
- Search GeneCopoeia for miRNA 3'UTR Target clone products for LOC101928590
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for LOC101928590
Sources for LOC101928590 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM® (Updated: 05-Mar-2021)
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) MedlinePlus Genetics
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNAcentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Open Targets Platform
- (175) 5SRRNADB
- (176) snoDB
- (177) MirGeneDB