Aliases for LOC101928590 Gene

Data sources for LOC101928590 Gene:

Subcategory (RNA class) for LOC101928590 Gene

lncRNA

Aliases for LOC101928590 Gene

External Ids for LOC101928590 Gene

Previous GeneCards Identifiers for LOC101928590 Gene

  • GC04U901580

Summaries for LOC101928590 Gene

GeneCards Summary for LOC101928590 Gene

LOC101928590 (Uncharacterized LOC101928590) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC101928590 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC101928590 Gene

Genomics for LOC101928590 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC101928590 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04J175786 Enhancer 0.2 Ensembl 250.7 -1.7 -1705 4.4 HSALNG0038686 LOC101928590 GPM6A ADAM29
GH04J175792 Enhancer 0.2 Ensembl 250.7 +1.0 995 0.2 LOC101928590 lnc-SPATA4-2 GPM6A ADAM29
GH04J175813 Promoter/Enhancer 1.2 EPDnew Ensembl ENCODE 7.3 +21.2 21195 5 BCL11A CHD1 ATF2 ZSCAN4 ATF7 POLR2A PRDM10 RAD21 lnc-SPATA4-2 GPM6A LOC101928590 SPCS3-AS1 ADAM29
GH04J175833 Enhancer 0.3 Ensembl 0.3 +44.1 44095 1.6 FOS lnc-SPATA4-2 LOC101928590 ENSG00000248249 GPM6A
GH04J175816 Enhancer 0.2 FANTOM5 0.3 +26.5 26452 0.2 lnc-SPATA4-2 LOC101928590 ENSG00000248249 GPM6A ADAM29
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC101928590 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC101928590 Gene

Latest Assembly
chr4:175,790,306-175,853,813
(GRCh38/hg38)
Size:
63,508 bases
Orientation:
Plus strand

Previous Assembly
chr4:176,711,458-176,733,340
(GRCh37/hg19 by Entrez Gene)
Size:
21,883 bases
Orientation:
Plus strand

chr4:176,711,458-176,733,340
(GRCh37/hg19 by Ensembl)
Size:
21,883 bases
Orientation:
Plus strand

Genomic View for LOC101928590 Gene

Genes around LOC101928590 on UCSC Golden Path with GeneCards custom track
LOC101928590 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LOC101928590 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101928590 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC101928590 Gene

Proteins for LOC101928590 Gene

Post-translational modifications for LOC101928590 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101928590 Gene

Domains & Families for LOC101928590 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC101928590 Gene

Function for LOC101928590 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101928590 Gene

Localization for LOC101928590 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101928590 Gene

Pathways & Interactions for LOC101928590 Gene

PathCards logo

SuperPathways for LOC101928590 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC101928590 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC101928590 Gene

Drugs & Compounds for LOC101928590 Gene

No Compound Related Data Available

Transcripts for LOC101928590 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC101928590 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00000B5C51_9606 lncRNA 1213 4

RefSeq: NR_125901,

Ensembl: ENST00000514864 (view in UCSC) ,

LNCipedia: lnc-WDR17-1:1,

NONCODE: NONHSAT099345.2,

URS00008BCF0C_9606 lncRNA 658 3

LncBook: HSALNT0081223,

LNCipedia: lnc-WDR17-1:2,

NONCODE: NONHSAT099346.2,

URS00009BDDD3_9606 lncRNA 1547 2

LncBook: HSALNT0081220,

NONCODE: NONHSAT199434.1,

URS00009B5422_9606 lncRNA 219 2

LncBook: HSALNT0081230,

NONCODE: NONHSAT199435.1,

URS0001BF4712_9606 lncRNA 4502 1

LncBook: HSALNT0081224,

LOC101928590 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC101928590 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101928590 Gene

No ASD Table

Relevant External Links for LOC101928590 Gene

GeneLoc Exon Structure for
LOC101928590

Expression for LOC101928590 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC101928590 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC101928590

genes like me logo Genes that share expression patterns with LOC101928590: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101928590 Gene

Orthologs for LOC101928590 Gene

Evolution for LOC101928590 Gene

ENSEMBL:
Gene Tree for LOC101928590 (if available)
TreeFam:
Gene Tree for LOC101928590 (if available)

No data available for Orthologs for LOC101928590 Gene

Paralogs for LOC101928590 Gene

No data available for Paralogs for LOC101928590 Gene

Variants for LOC101928590 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LOC101928590 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for LOC101928590 Gene

Variant ID Type Subtype PubMed ID
esv3569837 CNV loss 25503493
esv3603268 CNV gain 21293372
esv3603269 CNV gain 21293372

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Variation tolerance and Additional Variant Information for LOC101928590 Gene

Disorders for LOC101928590 Gene

Additional Disease Information for LOC101928590

Open Targets Platform
Open Targets Platform

No disorders were found for LOC101928590 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC101928590 Gene

Publications for LOC101928590 Gene

No publications were found for LOC101928590 Gene.

No data available for Mastermind for LOC101928590 Gene

Products for LOC101928590 Gene

Sources for LOC101928590 Gene