LOC101928590 Gene (RNA Gene)

Uncharacterized LOC101928590

GC04P175790
GIFtS:
10

Aliases for LOC101928590 Gene

Subcategory (RNA class) for LOC101928590 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LOC101928590 Gene

  • Uncharacterized LOC101928590 3
  • Novel Transcript, Antisense To GPM6A 5
  • NONHSAG039392 92
  • HSALNG0038687 167
  • Lnc-WDR17-1 168
  • AC097537.1 5

External Ids for LOC101928590 Gene

Previous GeneCards Identifiers for LOC101928590 Gene

  • GC04U901580

Summaries for LOC101928590 Gene

GeneCards Summary for LOC101928590 Gene

LOC101928590 (Uncharacterized LOC101928590) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC101928590 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC101928590 Gene

Genomics for LOC101928590 Gene

GeneHancer (GH) Regulatory Elements for LOC101928590 Gene

Promoters and enhancers for LOC101928590 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH04J175791 Enhancer 0.3 Ensembl 500.7 +1.3 1294 0.4 SMARCA4 LOC101928590 lnc-SPATA4-2 GPM6A
GH04J175786 Enhancer 0.3 Ensembl 500.7 -1.7 -1706 4.4 RFX1 LOC101928590 piR-37097-080 GPM6A
GH04J175813 Promoter/Enhancer 1.2 EPDnew Ensembl ENCODE 7.3 +21.1 21094 4.8 EP300 BCL11A SMC3 POLR2A CHD1 ATF2 SMARCA4 JUND ATF7 PRDM10 lnc-SPATA4-2 GPM6A LOC101928590 ENSG00000248980
GH04J175775 Enhancer 0.5 ENCODE 0.4 -13.8 -13791 1.5 POLR2A SIN3A EP300 POU5F1 NANOG MAFK LOC101928590 piR-37097-080 GPM6A
GH04J175808 Enhancer 0.3 Ensembl 0.4 +17.7 17694 0.8 RAD21 CTCF ENSG00000248980 lnc-SPATA4-2 LOC101928590 GPM6A
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC101928590 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC101928590 Gene

Genomic Locations for LOC101928590 Gene
chr4:175,790,307-175,835,413
(GRCh38/hg38)
Size:
45,107 bases
Orientation:
Plus strand
chr4:176,711,458-176,733,340
(GRCh37/hg19)
Size:
21,883 bases
Orientation:
Plus strand

Genomic View for LOC101928590 Gene

Genes around LOC101928590 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC101928590 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101928590 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LOC101928590 Gene

Proteins for LOC101928590 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for LOC101928590 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101928590 Gene

Domains & Families for LOC101928590 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC101928590 Gene

Function for LOC101928590 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for LOC101928590 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101928590 Gene

Localization for LOC101928590 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101928590 Gene

Pathways & Interactions for LOC101928590 Gene

PathCards logo

SuperPathways for LOC101928590 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LOC101928590 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC101928590 Gene

Drugs & Compounds for LOC101928590 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for LOC101928590 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for LOC101928590 Gene

5 RNACentral transcripts :
1 REFSEQ mRNAs :
1 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
4 NONCODE transcripts :
4 LncBook transcripts :
2 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101928590 Gene

No ASD Table

Relevant External Links for LOC101928590 Gene

GeneLoc Exon Structure for
LOC101928590

Expression for LOC101928590 Gene

Products:

  1. Primer
  2. Gene Expression Assay

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC101928590 Gene

mRNA expression in normal human tissues for LOC101928590 Gene
mRNA expression by GTEx for LOC101928590 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC101928590

genes like me logo Genes that share expression patterns with LOC101928590: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101928590 Gene

Orthologs for LOC101928590 Gene

Evolution for LOC101928590 Gene

ENSEMBL:
Gene Tree for LOC101928590 (if available)
TreeFam:
Gene Tree for LOC101928590 (if available)

No data available for Orthologs for LOC101928590 Gene

Paralogs for LOC101928590 Gene

No data available for Paralogs for LOC101928590 Gene

Variants for LOC101928590 Gene

Products:

  1. SNP Genotyping and Copy Number Assay

Additional dbSNP identifiers (rs#s) for LOC101928590 Gene

Structural Variations from Database of Genomic Variants (DGV) for LOC101928590 Gene

Variant ID Type Subtype PubMed ID
esv3569837 CNV loss 25503493
esv3603268 CNV gain 21293372
esv3603269 CNV gain 21293372

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Variation tolerance and Additional Variant Information for LOC101928590 Gene

Disorders for LOC101928590 Gene

No disorders were found for LOC101928590 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC101928590 Gene

Publications for LOC101928590 Gene

No publications were found for LOC101928590 Gene.

No data available for Mastermind for LOC101928590 Gene

Products for LOC101928590 Gene

Sources for LOC101928590 Gene