Aliases for LOC101928565 Gene

Subcategory (RNA class) for LOC101928565 Gene

lncRNA

Aliases for LOC101928565 Gene

  • Uncharacterized LOC101928565 3

External Ids for LOC101928565 Gene

Previous GeneCards Identifiers for LOC101928565 Gene

  • GC01U903732
  • GC01M168402

Summaries for LOC101928565 Gene

GeneCards Summary for LOC101928565 Gene

LOC101928565 (Uncharacterized LOC101928565) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC101928565 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC101928565 Gene

Genomics for LOC101928565 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC101928565 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J168495 Enhancer 1.4 FANTOM5 Ensembl ENCODE CraniofacialAtlas 0.7 -2.4 -2394 5.9 GATAD2A REST TFE3 ZNF174 PRDM1 RBFOX2 RXRB IRF2 IKZF2 SP1 NME7 XCL2 XCL1 ENSG00000228697 LOC101928565 RPL7AP19 TBX19
GH01J168475 Enhancer 1.1 FANTOM5 Ensembl ENCODE 0.4 +18.3 18326 3 GATAD2A TFE3 RFX1 RCOR2 IRF2 SOX13 RFX3 TCF7 BMI1 FOXA2 ENSG00000228697 LOC101928565 QRSL1P1 XCL2 TBX19
GH01J168465 Enhancer 1.3 FANTOM5 Ensembl ENCODE 0.3 +27.0 26977 6.5 PRDM10 ZNF629 LEF1 IKZF1 ZNF692 JUND LARP7 STAT3 MTA2 PKNOX1 ATP1B1 LOC101928596 QRSL1P1 ENSG00000228697 LOC101928565 XCL2 TBX19
GH01J168481 Enhancer 0.8 Ensembl ENCODE 0.4 +12.1 12143 5.8 SOX13 CEBPB JUND USF1 RCOR1 AFF1 EP300 NR2F1 NR2F6 GLIS1 ATP1B1 LOC101928596 XCL1 LOC101928565 ENSG00000228697 QRSL1P1 XCL2 TBX19
GH01J168487 Enhancer 0.4 Ensembl ENCODE 0.4 +7.4 7407 1.3 CEBPB ENSG00000228697 LOC101928565 QRSL1P1 XCL2 TBX19
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC101928565 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC101928565 Gene

Genomic Locations for LOC101928565 Gene
chr1:168,464,114-168,495,644
(GRCh38/hg38)
Size:
31,531 bases
Orientation:
Minus strand
chr1:168,433,452-168,464,882
(GRCh37/hg19)
Size:
31,431 bases
Orientation:
Minus strand

Genomic View for LOC101928565 Gene

Genes around LOC101928565 on UCSC Golden Path with GeneCards custom track
LOC101928565 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LOC101928565 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101928565 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC101928565 Gene

Proteins for LOC101928565 Gene

Post-translational modifications for LOC101928565 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101928565 Gene

Domains & Families for LOC101928565 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC101928565 Gene

Function for LOC101928565 Gene

Phenotypes From GWAS Catalog for LOC101928565 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101928565 Gene

Localization for LOC101928565 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101928565 Gene

Pathways & Interactions for LOC101928565 Gene

PathCards logo

SuperPathways for LOC101928565 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC101928565 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC101928565 Gene

Drugs & Compounds for LOC101928565 Gene

No Compound Related Data Available

Transcripts for LOC101928565 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC101928565 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00007E3FF8_9606 lncRNA 619 1

RefSeq: NR_125956,

LOC101928565 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC101928565 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101928565 Gene

No ASD Table

Relevant External Links for LOC101928565 Gene

GeneLoc Exon Structure for
LOC101928565

Expression for LOC101928565 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC101928565 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC101928565

genes like me logo Genes that share expression patterns with LOC101928565: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101928565 Gene

Orthologs for LOC101928565 Gene

No data available for Orthologs and Evolution for LOC101928565 Gene

Paralogs for LOC101928565 Gene

No data available for Paralogs for LOC101928565 Gene

Variants for LOC101928565 Gene

Additional dbSNP identifiers (rs#s) for LOC101928565 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC101928565 Gene

Disorders for LOC101928565 Gene

No disorders were found for LOC101928565 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC101928565 Gene

Publications for LOC101928565 Gene

No publications were found for LOC101928565 Gene.

No data available for Mastermind for LOC101928565 Gene

Products for LOC101928565 Gene

Sources for LOC101928565 Gene