Aliases for LOC101928557 Gene

Subcategory (RNA class) for LOC101928557 Gene

lncRNA

Quality Score for this RNA gene is

15

Aliases for LOC101928557 Gene

  • Uncharacterized LOC101928557 3
  • Novel Transcript, Antisense To COX4NB 5
  • HSALNG0113239 169
  • NONHSAG020197 94
  • Lnc-COX4I1-1 170
  • AC018695.3 5

External Ids for LOC101928557 Gene

Previous GeneCards Identifiers for LOC101928557 Gene

  • GC16U901618
  • GC16P085828

Summaries for LOC101928557 Gene

GeneCards Summary for LOC101928557 Gene

LOC101928557 (Uncharacterized LOC101928557) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC101928557 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC101928557 Gene

Genomics for LOC101928557 Gene

GeneHancer (GH) Regulatory Elements for LOC101928557 Gene

Promoters and enhancers for LOC101928557 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J085791 Enhancer 0.3 Ensembl 750.6 -0.5 -514 0.2 KDM1A LOC101928557 EMC8 ENSG00000270184
GH16J085789 Enhancer 0.3 Ensembl 0.6 -2.2 -2214 2 ZNF384 RARA EMC8 LOC101928557 ENSG00000270184
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC101928557 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC101928557 Gene

Genomic Locations for LOC101928557 Gene
chr16:85,792,415-85,792,933
(GRCh38/hg38)
Size:
519 bases
Orientation:
Plus strand
chr16:85,826,021-85,826,539
(GRCh37/hg19)
Size:
519 bases
Orientation:
Plus strand

Genomic View for LOC101928557 Gene

Genes around LOC101928557 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC101928557 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101928557 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC101928557 Gene

Proteins for LOC101928557 Gene

Post-translational modifications for LOC101928557 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101928557 Gene

Domains & Families for LOC101928557 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC101928557 Gene

Function for LOC101928557 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101928557 Gene

Localization for LOC101928557 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101928557 Gene

Pathways & Interactions for LOC101928557 Gene

PathCards logo

SuperPathways for LOC101928557 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC101928557 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC101928557 Gene

Drugs & Compounds for LOC101928557 Gene

No Compound Related Data Available

Transcripts for LOC101928557 Gene

mRNA/cDNA for LOC101928557 Gene

(1) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(2) RNACentral transcripts :
(1) NONCODE transcripts :
(1) LncBook transcripts :
(1) LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101928557 Gene

No ASD Table

Relevant External Links for LOC101928557 Gene

GeneLoc Exon Structure for
LOC101928557

Expression for LOC101928557 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC101928557 Gene

mRNA differential expression in normal tissues according to GTEx for LOC101928557 Gene

This gene is overexpressed in Testis (x43.7).
genes like me logo Genes that share expression patterns with LOC101928557: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101928557 Gene

Orthologs for LOC101928557 Gene

Evolution for LOC101928557 Gene

ENSEMBL:
Gene Tree for LOC101928557 (if available)
TreeFam:
Gene Tree for LOC101928557 (if available)

No data available for Orthologs for LOC101928557 Gene

Paralogs for LOC101928557 Gene

No data available for Paralogs for LOC101928557 Gene

Variants for LOC101928557 Gene

Sequence variations from dbSNP and Humsavar for LOC101928557 Gene

SNP ID Clin Chr 16 pos Variation AA Info Type
rs1000831746 -- 85,791,228(+) T/C upstream_transcript_variant
rs1001508979 -- 85,792,136(+) A/G upstream_transcript_variant
rs1001633644 -- 85,791,503(+) G/A upstream_transcript_variant
rs1001934883 -- 85,792,438(+) T/A non_coding_transcript_variant
rs1001965635 -- 85,792,548(+) T/C non_coding_transcript_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC101928557 Gene

Disorders for LOC101928557 Gene

No disorders were found for LOC101928557 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC101928557 Gene

Publications for LOC101928557 Gene

No publications were found for LOC101928557 Gene.

No data available for External Links for LOC101928557 Gene

Products for LOC101928557 Gene

Sources for LOC101928557 Gene