Aliases for LOC101928551 Gene

Data sources for LOC101928551 Gene:

Subcategory (RNA class) for LOC101928551 Gene

lncRNA

Aliases for LOC101928551 Gene

External Ids for LOC101928551 Gene

Previous GeneCards Identifiers for LOC101928551 Gene

  • GC04U901710

Summaries for LOC101928551 Gene

GeneCards Summary for LOC101928551 Gene

LOC101928551 (Uncharacterized LOC101928551) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC101928551 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC101928551 Gene

Genomics for LOC101928551 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC101928551 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04J174828 Promoter/Enhancer 1.7 EPDnew Ensembl ENCODE CraniofacialAtlas 250.7 -0.3 -267 1.6 SIN3A REST YY1 SP2 ZNF316 SMARCE1 EHMT2 PKNOX1 TAF1 NCOA1 ADAM29 GLRA3 LOC101928551 lnc-ADAM29-3 HPGD
GH04J174870 Enhancer 0.6 Ensembl ENCODE 0.3 +41.4 41433 0.6 ZNF217 CTBP1 SMARCE1 DPF2 ENSG00000250596 piR-59136-022 LOC101928551 ADAM29 lnc-GLRA3-2 ENSG00000250200
GH04J174927 Enhancer 0.7 ENCODE 0.2 +99.2 99203 2.5 SP1 BCL11A TRIM22 GABPA EBF1 BHLHE40 BATF ELF1 IKZF1 NR2F1 ENSG00000250200 lnc-GLRA3-2 ENSG00000250431 ADAM29 LOC101928551
GH04J174854 Enhancer 0.3 Ensembl 0.3 +25.5 25534 0.4 YY1 piR-59136-022 ADAM29 LOC101928551
GH04J174875 Promoter 0.3 EPDnew 0.3 +45.4 45386 0.1 GLRA3 piR-59136-022 ENSG00000250200 LOC101928551 ADAM29 lnc-GLRA3-2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC101928551 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC101928551 Gene

Latest Assembly
chr4:174,829,667-174,936,977
(GRCh38/hg38)
Size:
107,311 bases
Orientation:
Plus strand

Previous Assembly
chr4:175,752,879-175,797,115
(GRCh37/hg19 by Entrez Gene)
Size:
44,237 bases
Orientation:
Plus strand

Genomic View for LOC101928551 Gene

Genes around LOC101928551 on UCSC Golden Path with GeneCards custom track
LOC101928551 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LOC101928551 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101928551 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC101928551 Gene

Proteins for LOC101928551 Gene

Post-translational modifications for LOC101928551 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101928551 Gene

Domains & Families for LOC101928551 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC101928551 Gene

Function for LOC101928551 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101928551 Gene

Localization for LOC101928551 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101928551 Gene

Pathways & Interactions for LOC101928551 Gene

PathCards logo

SuperPathways for LOC101928551 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC101928551 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC101928551 Gene

Drugs & Compounds for LOC101928551 Gene

No Compound Related Data Available

Transcripts for LOC101928551 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC101928551 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00007E4B30_9606 lncRNA 1730 4

RefSeq: NR_125900,

LncBook: HSALNT0081169,

LNCipedia: lnc-ADAM29-5:5,

NONCODE: NONHSAT099329.2,

URS00008B5499_9606 lncRNA 366 3

LncBook: HSALNT0081170,

LNCipedia: lnc-ADAM29-5:6,

NONCODE: NONHSAT099330.2,

URS00008BF3D4_9606 lncRNA 310 3

LncBook: HSALNT0081168,

LNCipedia: lnc-ADAM29-5:4,

NONCODE: NONHSAT099328.2,

URS00008B74FD_9606 lncRNA 2273 1

LNCipedia: lnc-ADAM29-5:2,

URS0001BEC5F8_9606 lncRNA 1725 1

LncBook: HSALNT0081169,

LOC101928551 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC101928551 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101928551 Gene

No ASD Table

Relevant External Links for LOC101928551 Gene

GeneLoc Exon Structure for
LOC101928551

Expression for LOC101928551 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC101928551

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101928551 Gene

Orthologs for LOC101928551 Gene

No data available for Orthologs and Evolution for LOC101928551 Gene

Paralogs for LOC101928551 Gene

No data available for Paralogs for LOC101928551 Gene

Variants for LOC101928551 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LOC101928551 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for LOC101928551 Gene

Variant ID Type Subtype PubMed ID
esv3449088 CNV duplication 20981092
esv3603238 CNV gain 21293372
esv3603239 CNV gain 21293372
nsv476856 CNV novel sequence insertion 20440878
nsv830156 CNV gain 17160897

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Variation tolerance and Additional Variant Information for LOC101928551 Gene

Disorders for LOC101928551 Gene

No disorders were found for LOC101928551 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC101928551 Gene

Publications for LOC101928551 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

No data available for Mastermind for LOC101928551 Gene

Products for LOC101928551 Gene

Sources for LOC101928551 Gene