Free for academic non-profit institutions. Other users need a Commercial license
Aliases for LOC101928551 Gene
Data sources for LOC101928551 Gene:
Subcategory (RNA class) for LOC101928551 Gene
lncRNA
Aliases for LOC101928551 Gene
- Uncharacterized LOC101928551 (NCBI Entrez Gene)
- NONHSAG039381.2 (NONCODE)
- HSALNG0038661 (LncBook)
- Lnc-ADAM29-5 (LNCipedia)
External Ids for LOC101928551 Gene
- NCBI Entrez Gene: 101928551
Previous GeneCards Identifiers for LOC101928551 Gene
- GC04U901710
Summaries for LOC101928551 Gene
GeneCards Summary for LOC101928551 Gene
LOC101928551 (Uncharacterized LOC101928551) is an RNA Gene, and is affiliated with the lncRNA class.
Additional gene information for LOC101928551 Gene
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC101928551 Gene
Genomics for LOC101928551 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for LOC101928551 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH04J174828 | Promoter/Enhancer | 1.7 | EPDnew Ensembl ENCODE CraniofacialAtlas | 250.7 | -0.3 | -267 | 1.6 | SIN3A REST YY1 SP2 ZNF316 SMARCE1 EHMT2 PKNOX1 TAF1 NCOA1 | ADAM29 GLRA3 LOC101928551 lnc-ADAM29-3 HPGD | |
| GH04J174870 | Enhancer | 0.6 | Ensembl ENCODE | 0.3 | +41.4 | 41433 | 0.6 | ZNF217 CTBP1 SMARCE1 DPF2 | ENSG00000250596 piR-59136-022 LOC101928551 ADAM29 lnc-GLRA3-2 ENSG00000250200 | |
| GH04J174927 | Enhancer | 0.7 | ENCODE | 0.2 | +99.2 | 99203 | 2.5 | SP1 BCL11A TRIM22 GABPA EBF1 BHLHE40 BATF ELF1 IKZF1 NR2F1 | ENSG00000250200 lnc-GLRA3-2 ENSG00000250431 ADAM29 LOC101928551 | |
| GH04J174854 | Enhancer | 0.3 | Ensembl | 0.3 | +25.5 | 25534 | 0.4 | YY1 | piR-59136-022 ADAM29 LOC101928551 | |
| GH04J174875 | Promoter | 0.3 | EPDnew | 0.3 | +45.4 | 45386 | 0.1 | GLRA3 piR-59136-022 ENSG00000250200 LOC101928551 ADAM29 lnc-GLRA3-2 |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around LOC101928551 on the GeneHancer Hub at the UCSC Golden Path
Genomic Locations for LOC101928551 Gene
Latest Assembly
- chr4:174,829,667-174,936,977
- (GRCh38/hg38)
- Size:
- 107,311 bases
- Orientation:
- Plus strand
Previous Assembly
- chr4:175,752,879-175,797,115
- (GRCh37/hg19 by Entrez Gene)
- Size:
- 44,237 bases
- Orientation:
- Plus strand
Genomic View for LOC101928551 Gene
Genes around LOC101928551 on UCSC Golden Path with GeneCards custom track
LOC101928551 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
- Cytogenetic band:
-
- 4q34.1 by Entrez Gene
LOC101928551 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for LOC101928551 Gene
Proteins for LOC101928551 Gene
Post-translational modifications for LOC101928551 Gene
No Post-translational modifications
No data available for DME Specific Peptides for LOC101928551 Gene
Domains & Families for LOC101928551 Gene
No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC101928551 Gene
Function for LOC101928551 Gene
CRISPR products for research
Inhibitory RNAs for research
Clone products for research
Cell Lines for research
No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101928551 Gene
Localization for LOC101928551 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101928551 Gene
Transcripts for LOC101928551 Gene
Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC101928551 Gene
| RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
|---|---|---|---|---|
| URS00007E4B30_9606 | lncRNA | 1730 | 4 |
RefSeq: NR_125900, LncBook: HSALNT0081169, LNCipedia: lnc-ADAM29-5:5, NONCODE: NONHSAT099329.2, |
| URS00008B5499_9606 | lncRNA | 366 | 3 |
LncBook: HSALNT0081170, LNCipedia: lnc-ADAM29-5:6, NONCODE: NONHSAT099330.2, |
| URS00008BF3D4_9606 | lncRNA | 310 | 3 |
LncBook: HSALNT0081168, LNCipedia: lnc-ADAM29-5:4, NONCODE: NONHSAT099328.2, |
| URS00008B74FD_9606 | lncRNA | 2273 | 1 |
LNCipedia: lnc-ADAM29-5:2, |
| URS0001BEC5F8_9606 | lncRNA | 1725 | 1 |
LncBook: HSALNT0081169, |
LOC101928551 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
Additional transcripts not in RNAcentral for LOC101928551 Gene
- 2 NCBI additional mRNA sequence :
CRISPR products for research
Inhibitory RNAs for research
Clone products for research
Relevant External Links for LOC101928551 Gene
- GeneLoc Exon Structure for
- LOC101928551
Expression for LOC101928551 Gene
Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC101928551
No Expression Related Data Available
Gene Expression Assays for research
No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101928551 Gene
Orthologs for LOC101928551 Gene
No data available for Orthologs and Evolution for LOC101928551 Gene
Paralogs for LOC101928551 Gene
No data available for Paralogs for LOC101928551 Gene
Variants for LOC101928551 Gene
All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).
| Variant ID | Type | Subtype | PubMed ID |
|---|---|---|---|
| esv3449088 | CNV | duplication | 20981092 |
| esv3603238 | CNV | gain | 21293372 |
| esv3603239 | CNV | gain | 21293372 |
| nsv476856 | CNV | novel sequence insertion | 20440878 |
| nsv830156 | CNV | gain | 17160897 |
SNP Genotyping and Copy Number Assays for research
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Variation tolerance and Additional Variant Information for LOC101928551 Gene
Disorders for LOC101928551 Gene
No disorders were found for LOC101928551 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC101928551 Gene
Publications for LOC101928551 Gene
- Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3
No data available for Mastermind for LOC101928551 Gene
Products for LOC101928551 Gene
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LOC101928551
- Origene Custom Protein Services for LOC101928551
- Browse OriGene Inhibitory RNA Products For LOC101928551
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for LOC101928551
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For LOC101928551
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for LOC101928551
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for LOC101928551
- Search GeneCopoeia for miRNA 3'UTR Target clone products for LOC101928551
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for LOC101928551
Sources for LOC101928551 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM® (Updated: 05-Mar-2021)
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) MedlinePlus Genetics
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNAcentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Open Targets Platform
- (175) 5SRRNADB
- (176) snoDB
- (177) MirGeneDB