LOC101928532 Gene (RNA Gene)

Uncharacterized LOC101928532

GC04M008746
GIFtS:
6
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Aliases for LOC101928532 Gene

Subcategory (RNA class) for LOC101928532 Gene

lncRNA

Number of RNA Genes sources:

2 / 17

Aliases for LOC101928532 Gene

  • Uncharacterized LOC101928532 3
  • Novel Transcript 5
  • NONHSAG037445.2 91
  • AC209005.1 5
  • Lnc-HMX1-1 165

External Ids for LOC101928532 Gene

Additional External Ids for LOC101928532 Gene

Previous GeneCards Identifiers for LOC101928532 Gene

  • GC04U901587

Summaries for LOC101928532 Gene

GeneCards Summary for LOC101928532 Gene

LOC101928532 (Uncharacterized LOC101928532) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC101928532 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC101928532 Gene

Genomics for LOC101928532 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for LOC101928532 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH04J008724 Enhancer 0.6 Ensembl CraniofacialAtlas 0.4 +22.5 22492 0.9 ZFHX2 RCOR1 KLF1 CHD2 EGR2 GATA2 HSALNG0032778 LOC101928532 CPZ HMX1
GH04J008741 Enhancer 0.4 Ensembl 0.4 +6.5 6529 0.4 ZFHX2 ATF3 ATF2 EGR2 LOC101928532 HSALNG0032778 HMX1 CPZ
GH04J008770 Enhancer 0.5 Ensembl CraniofacialAtlas 0.4 -23.5 -23470 0.4 ZIC2 MYC LOC101928532 HSALNG0032781 HMX1 CPZ
GH04J008779 Enhancer 0.5 Ensembl 0.3 -32.0 -31971 0.2 ZIC2 FEZF1 PRDM6 GLIS1 L3MBTL2 SP7 PKNOX1 HSALNG0032781 LOC101928532 HMX1 CPZ
GH04J008726 Enhancer 0.3 Ensembl 0.4 +19.7 19729 1.6 ZNF24 ZFP36 HSALNG0032778 LOC101928532 CPZ HMX1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC101928532 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC101928532 Gene

Genomic Locations for LOC101928532 Gene
chr4:8,745,391-8,747,730
(GRCh38/hg38)
Size:
2,340 bases
Orientation:
Minus strand
chr4:8,747,123-8,747,759
(GRCh37/hg19)
Size:
637 bases
Orientation:
Minus strand

Genomic View for LOC101928532 Gene

Genes around LOC101928532 on UCSC Golden Path with GeneCards custom track
LOC101928532 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LOC101928532 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101928532 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LOC101928532 Gene

Proteins for LOC101928532 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for LOC101928532 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101928532 Gene

Domains & Families for LOC101928532 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC101928532 Gene

Function for LOC101928532 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for LOC101928532 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101928532 Gene

Localization for LOC101928532 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101928532 Gene

Pathways & Interactions for LOC101928532 Gene

PathCards logo

SuperPathways for LOC101928532 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC101928532 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC101928532 Gene

Drugs & Compounds for LOC101928532 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for LOC101928532 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC101928532 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000EF11AC_9606 lncRNA 956 1

Ensembl: ENST00000514043 (view in UCSC) , ENST00000671955 (view in UCSC) ,

URS00008B2B12_9606 lncRNA 849 2

LNCipedia: lnc-HMX1-1:2,

NONCODE: NONHSAT095114.2,

URS00008B5D1B_9606 lncRNA 833 2

LNCipedia: lnc-HMX1-1:3,

NONCODE: NONHSAT095113.2,

URS00009BF32C_9606 lncRNA 848 1

NONCODE: NONHSAT199719.1,

URS000046D066_9606 lncRNA 464 1

LNCipedia: lnc-HMX1-1:1,

LOC101928532 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC101928532 Gene

3 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101928532 Gene

No ASD Table

Relevant External Links for LOC101928532 Gene

GeneLoc Exon Structure for
LOC101928532

Expression for LOC101928532 Gene

Products:

  1. Primer
  2. Gene Expression Assay

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC101928532 Gene

mRNA expression in normal human tissues for LOC101928532 Gene
mRNA expression by GTEx for LOC101928532 Gene
genes like me logo Genes that share expression patterns with LOC101928532: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101928532 Gene

Orthologs for LOC101928532 Gene

Evolution for LOC101928532 Gene

ENSEMBL:
Gene Tree for LOC101928532 (if available)
TreeFam:
Gene Tree for LOC101928532 (if available)

No data available for Orthologs for LOC101928532 Gene

Paralogs for LOC101928532 Gene

No data available for Paralogs for LOC101928532 Gene

Variants for LOC101928532 Gene

Products:

  1. SNP Genotyping and Copy Number Assay

Additional dbSNP identifiers (rs#s) for LOC101928532 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC101928532 Gene

Disorders for LOC101928532 Gene

No disorders were found for LOC101928532 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC101928532 Gene

Publications for LOC101928532 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

No data available for Mastermind for LOC101928532 Gene

Products for LOC101928532 Gene

Sources for LOC101928532 Gene