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Aliases for LOC101928525 Gene

Subcategory (RNA class) for LOC101928525 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for LOC101928525 Gene

  • Uncharacterized LOC101928525 3
  • AL161452.1 5

External Ids for LOC101928525 Gene

Previous GeneCards Identifiers for LOC101928525 Gene

  • GC09U901994

Summaries for LOC101928525 Gene

GeneCards Summary for LOC101928525 Gene

LOC101928525 (Uncharacterized LOC101928525) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC101928525 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC101928525 Gene

Genomics for LOC101928525 Gene

GeneHancer (GH) Regulatory Elements for LOC101928525 Gene

Promoters and enhancers for LOC101928525 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09I135506 Enhancer 0.8 ENCODE 550.8 -0.1 -133 0.2 HDAC1 ATF1 ZBTB40 RARA EGR1 ATF7 CREM SMAD5 NCOA1 ELF1 LOC101928525 LCN1
GH09I135504 Enhancer 0.7 ENCODE 550.8 +1.6 1568 0.3 CTCF ATF1 NFATC3 BACH1 ZNF48 RAD21 ZNF335 POLR2A SMC3 ZNF143 LOC101928525 C9orf116
GH09I136358 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 10.6 -855.2 -855154 5.5 HDGF SMAD1 MLX ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 POLR2B DNLZ INPP5E ANAPC2 SNHG7 NPDC1 SDCCAG3 MAN1B1 SNAPC4 CARD9 AJM1
GH09I135947 Enhancer 1.2 ENCODE dbSUPER 10.6 -444.2 -444160 5.4 HDGF PKNOX1 SMAD1 FOXA2 ARNT SIN3A POLR2B ZNF766 CBX5 FOS SNHG7 SEC16A SDCCAG3 INPP5E LOC101928525 QSOX2 UBAC1 PIR47641
GH09I135511 Enhancer 0.8 ENCODE 0.4 -5.2 -5236 1 PKNOX1 ATF1 TAF9B BATF ZBTB40 FOS ATF7 IKZF2 RUNX3 CREM LOC101928525 LCN1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC101928525 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC101928525 Gene

Genomic Locations for LOC101928525 Gene
chr9:135,503,273-135,506,447
(GRCh38/hg38)
Size:
3,175 bases
Orientation:
Minus strand
chr9:138,395,119-138,398,293
(GRCh37/hg19)

Genomic View for LOC101928525 Gene

Genes around LOC101928525 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC101928525 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101928525 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC101928525 Gene

Proteins for LOC101928525 Gene

Post-translational modifications for LOC101928525 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101928525 Gene

Domains & Families for LOC101928525 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC101928525 Gene

Function for LOC101928525 Gene

Phenotypes From GWAS Catalog for LOC101928525 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101928525 Gene

Localization for LOC101928525 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101928525 Gene

Pathways & Interactions for LOC101928525 Gene

SuperPathways for LOC101928525 Gene

No Data Available

Interacting Proteins for LOC101928525 Gene

Gene Ontology (GO) - Biological Process for LOC101928525 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC101928525 Gene

Drugs & Compounds for LOC101928525 Gene

No Compound Related Data Available

Transcripts for LOC101928525 Gene

mRNA/cDNA for LOC101928525 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101928525 Gene

No ASD Table

Relevant External Links for LOC101928525 Gene

GeneLoc Exon Structure for
LOC101928525

Expression for LOC101928525 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC101928525 Gene

genes like me logo Genes that share expression patterns with LOC101928525: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101928525 Gene

Orthologs for LOC101928525 Gene

Evolution for LOC101928525 Gene

ENSEMBL:
Gene Tree for LOC101928525 (if available)
TreeFam:
Gene Tree for LOC101928525 (if available)

No data available for Orthologs for LOC101928525 Gene

Paralogs for LOC101928525 Gene

No data available for Paralogs for LOC101928525 Gene

Variants for LOC101928525 Gene

Sequence variations from dbSNP and Humsavar for LOC101928525 Gene

SNP ID Clin Chr 09 pos Variation AA Info Type
rs1000085001 -- 135,503,322(-) A/G non_coding_transcript_variant
rs1000314996 -- 135,505,326(-) C/T intron_variant
rs1000684094 -- 135,504,340(-) A/G intron_variant
rs1001312607 -- 135,508,380(-) C/T upstream_transcript_variant
rs1001505433 -- 135,505,874(-) G/T non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC101928525 Gene

Variant ID Type Subtype PubMed ID
esv2739138 CNV deletion 23290073
esv3573422 CNV loss 25503493
nsv1125319 OTHER inversion 24896259
nsv466656 CNV gain 19166990
nsv469913 CNV loss 18288195
nsv615842 CNV gain 21841781
nsv615882 CNV gain 21841781

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC101928525 Gene

Disorders for LOC101928525 Gene

Additional Disease Information for LOC101928525

No disorders were found for LOC101928525 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC101928525 Gene

Publications for LOC101928525 Gene

No publications were found for LOC101928525 Gene.

Products for LOC101928525 Gene

Sources for LOC101928525 Gene

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