Aliases for LOC101928523 Gene

Subcategory (RNA class) for LOC101928523 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LOC101928523 Gene

  • Uncharacterized LOC101928523 3
  • NONHSAG053086.2 91
  • HSALNG0073381 164
  • Lnc-SMC2-1 165

External Ids for LOC101928523 Gene

Previous GeneCards Identifiers for LOC101928523 Gene

  • GC09U902025

Summaries for LOC101928523 Gene

GeneCards Summary for LOC101928523 Gene

LOC101928523 (Uncharacterized LOC101928523) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC101928523 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC101928523 Gene

Genomics for LOC101928523 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC101928523 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09J104074 Enhancer 0.8 Ensembl ENCODE 0.2 +76.0 75958 3.7 CEBPB SP1 YY1 ZBTB33 JUND NFIC FOSL2 CEBPG BHLHE40 ATF4 SMC2 piR-38351-496 piR-42491-235 LOC101928523
GH09J104081 Enhancer 0.3 Ensembl 0.2 +82.9 82921 1.2 SPI1 piR-38351-496 SMC2 SMC2-AS1 LOC101928523
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC101928523 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC101928523 Gene

Genomic Locations for LOC101928523 Gene
chr9:103,999,480-104,085,696
(GRCh38/hg38)
Size:
86,217 bases
Orientation:
Plus strand

Genomic View for LOC101928523 Gene

Genes around LOC101928523 on UCSC Golden Path with GeneCards custom track
LOC101928523 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LOC101928523 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101928523 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC101928523 Gene

Proteins for LOC101928523 Gene

Post-translational modifications for LOC101928523 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101928523 Gene

Domains & Families for LOC101928523 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC101928523 Gene

Function for LOC101928523 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101928523 Gene

Localization for LOC101928523 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101928523 Gene

Pathways & Interactions for LOC101928523 Gene

PathCards logo

SuperPathways for LOC101928523 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC101928523 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC101928523 Gene

Drugs & Compounds for LOC101928523 Gene

No Compound Related Data Available

Transcripts for LOC101928523 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC101928523 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000759E86_9606 lncRNA 449 2

RefSeq: NR_109803,

LNCipedia: lnc-SMC2-1:5,

URS00008C1DED_9606 lncRNA 1561 3

LncBook: HSALNT0153324,

LNCipedia: lnc-SMC2-1:4,

NONCODE: NONHSAT133783.2,

URS00008C2C83_9606 lncRNA 913 3

LncBook: HSALNT0153329,

LNCipedia: lnc-SMC2-1:3,

NONCODE: NONHSAT133786.2,

URS00008C1AE4_9606 lncRNA 806 2

LNCipedia: lnc-SMC2-1:1,

NONCODE: NONHSAT133785.2,

URS00008C0D6B_9606 lncRNA 598 2

LNCipedia: lnc-SMC2-1:2,

NONCODE: NONHSAT133784.2,

LOC101928523 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC101928523 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101928523 Gene

No ASD Table

Relevant External Links for LOC101928523 Gene

GeneLoc Exon Structure for
LOC101928523

Expression for LOC101928523 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC101928523

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101928523 Gene

Orthologs for LOC101928523 Gene

No data available for Orthologs and Evolution for LOC101928523 Gene

Paralogs for LOC101928523 Gene

No data available for Paralogs for LOC101928523 Gene

Variants for LOC101928523 Gene

Additional dbSNP identifiers (rs#s) for LOC101928523 Gene

Structural Variations from Database of Genomic Variants (DGV) for LOC101928523 Gene

Variant ID Type Subtype PubMed ID
nsv615049 CNV gain 21841781
nsv615054 CNV loss 21841781
nsv615064 CNV gain 21841781
nsv615065 CNV gain 21841781
nsv831676 CNV gain 17160897
nsv972798 CNV duplication 23825009

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Variation tolerance and Additional Variant Information for LOC101928523 Gene

Disorders for LOC101928523 Gene

No disorders were found for LOC101928523 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC101928523 Gene

Publications for LOC101928523 Gene

No publications were found for LOC101928523 Gene.

No data available for Mastermind for LOC101928523 Gene

Products for LOC101928523 Gene

Sources for LOC101928523 Gene