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Aliases for LOC101928521 Gene

Subcategory (RNA class) for LOC101928521 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC101928521 Gene

  • Uncharacterized LOC101928521 3 5
  • AC107464.1 5

External Ids for LOC101928521 Gene

Previous GeneCards Identifiers for LOC101928521 Gene

  • GC04U901740

Summaries for LOC101928521 Gene

GeneCards Summary for LOC101928521 Gene

LOC101928521 (Uncharacterized LOC101928521) is an RNA Gene, and is affiliated with the ncRNA class. Diseases associated with LOC101928521 include Retinitis Pigmentosa 40 and Congenital Stationary Night Blindness.

Additional gene information for LOC101928521 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC101928521 Gene

Genomics for LOC101928521 Gene

GeneHancer (GH) Regulatory Elements for LOC101928521 Gene

Promoters and enhancers for LOC101928521 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04J000686 Promoter/Enhancer 2.4 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 15.4 -32.3 -32287 3.5 DACH1 NR2F6 SP1 ZFX GTF2F1 L3MBTL2 SMARCA4 MYC IKZF1 MAX SLC49A3 ATP5ME LOC101928521 PCGF3 GAK MYL5 GC04M000683 GC04M000682 GC04P000669
GH04J000663 Promoter/Enhancer 1.3 Ensembl ENCODE dbSUPER 24.7 -7.7 -7727 1.3 MLLT1 ZNF687 POLR2A GTF2F1 DPF2 ELF1 IKZF1 CTCF USF1 SMARCA5 ENSG00000272927 LOC101928521 SLC49A3 GC04P000669 PDE6B
GH04J000673 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 11.2 -21.2 -21232 8.7 ZBTB33 DACH1 HDGF NR2F6 SP1 MNT ZFX CBFA2T2 HCFC1 MLLT1 ATP5ME MYL5 SLC49A3 LOC101928521 ENSG00000251188 GC04M000683 GC04M000682 GC04P000674 GC04P000669
GH04J000704 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 10 -50.0 -50042 2.6 MTA3 NR2F6 SP1 SMARCE1 ZFX MLLT1 GTF2F1 L3MBTL2 ZNF24 CDC5L PCGF3 LOC100129917 ZNF718 PIGG ENSG00000207009 CPLX1 TMEM271 ZNF141 ENSG00000272588 PDE6B
GH04J000472 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 9.8 +182.4 182419 2.1 LCORL SPI1 NR2F6 SP1 CEBPZ ZFX HCFC1 MLLT1 GTF2F1 ZNF687 ZNF721 ABCA11P LOC100533735 PIGG CRIPAK CPLX1 TMEM271 PCGF3 ENSG00000272588 ZNF718
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC101928521 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC101928521 Gene

Genomic Locations for LOC101928521 Gene
chr4:652,850-656,213
(GRCh38/hg38)
Size:
3,364 bases
Orientation:
Minus strand
chr4:646,639-649,434
(GRCh37/hg19)
Size:
2,796 bases
Orientation:
Minus strand

Genomic View for LOC101928521 Gene

Genes around LOC101928521 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC101928521 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101928521 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC101928521 Gene

Proteins for LOC101928521 Gene

Post-translational modifications for LOC101928521 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101928521 Gene

Domains & Families for LOC101928521 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC101928521 Gene

Function for LOC101928521 Gene

Phenotypes From GWAS Catalog for LOC101928521 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101928521 Gene

Localization for LOC101928521 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101928521 Gene

Pathways & Interactions for LOC101928521 Gene

SuperPathways for LOC101928521 Gene

No Data Available

Interacting Proteins for LOC101928521 Gene

Gene Ontology (GO) - Biological Process for LOC101928521 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC101928521 Gene

Drugs & Compounds for LOC101928521 Gene

No Compound Related Data Available

Transcripts for LOC101928521 Gene

mRNA/cDNA for LOC101928521 Gene

(1) Additional mRNA sequences :
(4) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(4) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101928521 Gene

No ASD Table

Relevant External Links for LOC101928521 Gene

GeneLoc Exon Structure for
LOC101928521

Expression for LOC101928521 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101928521 Gene

Orthologs for LOC101928521 Gene

Evolution for LOC101928521 Gene

ENSEMBL:
Gene Tree for LOC101928521 (if available)
TreeFam:
Gene Tree for LOC101928521 (if available)

No data available for Orthologs for LOC101928521 Gene

Paralogs for LOC101928521 Gene

No data available for Paralogs for LOC101928521 Gene

Variants for LOC101928521 Gene

Sequence variations from dbSNP and Humsavar for LOC101928521 Gene

SNP ID Clin Chr 04 pos Variation AA Info Type
rs114100439 likely-benign, Retinitis Pigmentosa, Recessive, Congenital Stationary Night Blindness, Dominant 657,389(-) C/T upstream_transcript_variant
rs121918579 pathogenic, Retinitis pigmentosa 40, Retinitis pigmentosa, not provided 654,119(-) C/T intron_variant, non_coding_transcript_variant
rs121918582 pathogenic, Congenital stationary night blindness, autosomal dominant 2 653,912(-) C/A non_coding_transcript_variant
rs138789637 uncertain-significance, Retinitis Pigmentosa, Recessive, Congenital Stationary Night Blindness, Dominant 653,929(-) G/A non_coding_transcript_variant
rs142597807 benign, likely-benign, not specified, Congenital Stationary Night Blindness, Dominant, Retinitis Pigmentosa, Recessive 654,100(-) T/C intron_variant, non_coding_transcript_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC101928521 Gene

Disorders for LOC101928521 Gene

MalaCards: The human disease database

(3) MalaCards diseases for LOC101928521 Gene - From: GeneCards

Disorder Aliases PubMed IDs
retinitis pigmentosa 40
  • rp40
congenital stationary night blindness
  • congenital essential nyctalopia
retinitis pigmentosa
  • retinitis pigmentosa 1
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for LOC101928521

genes like me logo Genes that share disorders with LOC101928521: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LOC101928521 Gene

Publications for LOC101928521 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for LOC101928521 Gene

Sources for LOC101928521 Gene

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