Aliases for LOC101928517 Gene

Data sources for LOC101928517 Gene:

Subcategory (RNA class) for LOC101928517 Gene

lncRNA

Aliases for LOC101928517 Gene

External Ids for LOC101928517 Gene

Previous GeneCards Identifiers for LOC101928517 Gene

  • GC19U901718
  • GC19M051659

Summaries for LOC101928517 Gene

GeneCards Summary for LOC101928517 Gene

LOC101928517 (Uncharacterized LOC101928517) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC101928517 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC101928517 Gene

Genomics for LOC101928517 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC101928517 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J051182 Promoter 0.6 Ensembl 250.7 -0.9 -931 1.4 MAX POLR2A EZH2 SIGLEC20P LOC101928517 HSALNG0127189 CD33 SIGLEC7
GH19J051181 Promoter 0.4 Ensembl 250.7 +0.1 69 0.2 SP1 LOC101928517 SIGLEC17P CD33 SIGLEC7
GH19J051203 Enhancer 0.5 Ensembl 6.1 -20.7 -20731 4.2 NFE2 MYC MAX EZH2 PRDM1 LOC101928517 SIGLECL1 ZNF614 MIR8074 SIGLEC21P lnc-CD33-3 CD33 SIGLEC7
GH19J051167 Promoter/Enhancer 1 Ensembl ENCODE 0.4 +14.2 14169 1.2 NR2C1 SPI1 MYC RAD51 MAX IKZF1 NR2F1 NR2F6 ESRRA L3MBTL2 SIGLEC17P LOC101928517 SIGLEC7 CD33
GH19J051159 Enhancer 1 Ensembl ENCODE 0.3 +23.6 23569 2 CTCF ARNT SIN3A REST ZNF740 NBN TRIM22 ZEB2 SMC3 RAD21 ZNF841 ZNF616 POLD1 ZNF350 CTU1 ZNF175 ZNF613 ZNF577 ENSG00000260160 ENSG00000268316
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC101928517 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC101928517 Gene

Latest Assembly
chr19:51,152,922-51,181,970
(GRCh38/hg38)
Size:
29,049 bases
Orientation:
Minus strand

Previous Assembly
chr19:51,656,180-51,685,222
(GRCh37/hg19 by Entrez Gene)
Size:
29,043 bases
Orientation:
Minus strand

chr19:51,656,180-51,685,222
(GRCh37/hg19 by Ensembl)
Size:
29,043 bases
Orientation:
Minus strand

Genomic View for LOC101928517 Gene

Genes around LOC101928517 on UCSC Golden Path with GeneCards custom track
LOC101928517 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LOC101928517 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101928517 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC101928517 Gene

Proteins for LOC101928517 Gene

Post-translational modifications for LOC101928517 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101928517 Gene

Domains & Families for LOC101928517 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC101928517 Gene

Function for LOC101928517 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101928517 Gene

Localization for LOC101928517 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101928517 Gene

Pathways & Interactions for LOC101928517 Gene

PathCards logo

SuperPathways for LOC101928517 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC101928517 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC101928517 Gene

Drugs & Compounds for LOC101928517 Gene

No Compound Related Data Available

Transcripts for LOC101928517 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC101928517 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000049625F_9606 lncRNA 1768 3

Ensembl: ENST00000600074 (view in UCSC) ,

LNCipedia: lnc-CTU1-2:6,

NONCODE: NONHSAT067413.2,

URS000075C27D_9606 lncRNA 1763 1

RefSeq: NR_110732,

URS00008BD25A_9606 lncRNA 1236 3

LncBook: HSALNT0261685,

LNCipedia: lnc-CTU1-2:5,

NONCODE: NONHSAT067416.2,

URS00008B2ABB_9606 lncRNA 610 3

LncBook: HSALNT0261687,

LNCipedia: lnc-CTU1-2:7,

NONCODE: NONHSAT067417.2,

URS00008B5700_9606 lncRNA 1094 2

LNCipedia: lnc-CTU1-2:3,

NONCODE: NONHSAT067415.2,

LOC101928517 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC101928517 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101928517 Gene

No ASD Table

Relevant External Links for LOC101928517 Gene

GeneLoc Exon Structure for
LOC101928517

Expression for LOC101928517 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC101928517 Gene

mRNA differential expression in normal tissues according to GTEx for LOC101928517 Gene

This gene is overexpressed in Whole Blood (x17.1) and Spleen (x10.3).
genes like me logo Genes that share expression patterns with LOC101928517: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101928517 Gene

Orthologs for LOC101928517 Gene

Evolution for LOC101928517 Gene

ENSEMBL:
Gene Tree for LOC101928517 (if available)
TreeFam:
Gene Tree for LOC101928517 (if available)

No data available for Orthologs for LOC101928517 Gene

Paralogs for LOC101928517 Gene

No data available for Paralogs for LOC101928517 Gene

Variants for LOC101928517 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LOC101928517 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for LOC101928517 Gene

Variant ID Type Subtype PubMed ID
esv2672778 CNV deletion 23128226
esv2718768 CNV deletion 23290073
esv3574598 CNV gain 25503493
esv3644668 CNV loss 21293372
nsv1140251 OTHER inversion 24896259

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Variation tolerance and Additional Variant Information for LOC101928517 Gene

Disorders for LOC101928517 Gene

Additional Disease Information for LOC101928517

Open Targets Platform
Open Targets Platform

No disorders were found for LOC101928517 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC101928517 Gene

Publications for LOC101928517 Gene

No publications were found for LOC101928517 Gene.

No data available for Mastermind for LOC101928517 Gene

Products for LOC101928517 Gene

Sources for LOC101928517 Gene