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Aliases for LOC101928499 Gene

Subcategory (RNA class) for LOC101928499 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC101928499 Gene

  • Uncharacterized LOC101928499 3
  • AC016044.1 5

External Ids for LOC101928499 Gene

Previous GeneCards Identifiers for LOC101928499 Gene

  • GC15U901517
  • GC15M054148
  • GC15M052815
  • GC15M052917
  • GC15M054038
  • GC15M054914
  • GC15M055352
  • GC15M055802
  • GC15M056239
  • GC15M056685

Summaries for LOC101928499 Gene

GeneCards Summary for LOC101928499 Gene

LOC101928499 (Uncharacterized LOC101928499) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC101928499 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC101928499 Gene

Genomics for LOC101928499 Gene

GeneHancer (GH) Regulatory Elements for LOC101928499 Gene

Promoters and enhancers for LOC101928499 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH15J052803 Promoter/Enhancer 1.4 EPDnew Ensembl ENCODE 659.1 +1.3 1318 2.6 CTCF FOXA2 TAF1 MAX RAD21 YY1 POLR2A EGR1 HNF4G EZH2 LOC101928499 LINC02490 ONECUT1 RNU2-53P
GH15J052789 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE dbSUPER 4.9 +16.2 16195 1.2 RB1 ZSCAN4 ARID4B SIN3A BMI1 ZBTB7B RAD21 ZNF335 ZNF614 EGR1 LOC105370824 ONECUT1 LOC101928499 GC15P052780
GH15J052780 Enhancer 1.1 Ensembl ENCODE 5.4 +25.8 25750 1.1 FOXA2 SMAD1 IRF4 YY1 ZNF143 ATF7 RUNX3 DEK RXRA JUNB GC15P052780 LOC101928499 LOC105370824 ONECUT1
GH15J052784 Enhancer 0.7 ENCODE dbSUPER 5.1 +22.3 22279 0.2 CTCF SUZ12 ZNF143 BACH1 REST RAD21 EZH2 LOC101928499 GC15P052780 ONECUT1 LOC105370824
GH15J052804 Enhancer 0.9 FANTOM5 ENCODE 0.7 +2.8 2805 0.3 FOXA2 TAF1 MAX RAD21 YY1 POLR2A EGR1 HNF4G EZH2 RXRA LINC02490 ONECUT1 RNU2-53P LOC101928499 GC15P052795 PIR33850
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC101928499 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC101928499 Gene

Genomic Locations for LOC101928499 Gene
chr15:52,800,166-52,806,418
(GRCh38/hg38)
Size:
6,253 bases
Orientation:
Minus strand
chr15:53,093,811-53,097,139
(GRCh37/hg19)
Size:
3,329 bases
Orientation:
Minus strand

Genomic View for LOC101928499 Gene

Genes around LOC101928499 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC101928499 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101928499 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC101928499 Gene

Proteins for LOC101928499 Gene

Post-translational modifications for LOC101928499 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101928499 Gene

Domains & Families for LOC101928499 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC101928499 Gene

Function for LOC101928499 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101928499 Gene

Localization for LOC101928499 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101928499 Gene

Pathways & Interactions for LOC101928499 Gene

SuperPathways for LOC101928499 Gene

No Data Available

Interacting Proteins for LOC101928499 Gene

Gene Ontology (GO) - Biological Process for LOC101928499 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC101928499 Gene

Drugs & Compounds for LOC101928499 Gene

No Compound Related Data Available

Transcripts for LOC101928499 Gene

mRNA/cDNA for LOC101928499 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(1) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101928499 Gene

No ASD Table

Relevant External Links for LOC101928499 Gene

GeneLoc Exon Structure for
LOC101928499

Expression for LOC101928499 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC101928499 Gene

mRNA differential expression in normal tissues according to GTEx for LOC101928499 Gene

This gene is overexpressed in Liver (x35.4), Pancreas (x5.7), and Testis (x5.3).
genes like me logo Genes that share expression patterns with LOC101928499: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101928499 Gene

Orthologs for LOC101928499 Gene

Evolution for LOC101928499 Gene

ENSEMBL:
Gene Tree for LOC101928499 (if available)
TreeFam:
Gene Tree for LOC101928499 (if available)

No data available for Orthologs for LOC101928499 Gene

Paralogs for LOC101928499 Gene

No data available for Paralogs for LOC101928499 Gene

Variants for LOC101928499 Gene

Sequence variations from dbSNP and Humsavar for LOC101928499 Gene

SNP ID Clin Chr 15 pos Variation AA Info Type
rs1000520964 -- 52,807,947(-) C/T genic_upstream_transcript_variant, non_coding_transcript_variant
rs1000569490 -- 52,802,686(-) A/G intron_variant, non_coding_transcript_variant
rs1001041515 -- 52,802,524(-) G/A intron_variant, non_coding_transcript_variant
rs1001188945 -- 52,810,757(-) C/T upstream_transcript_variant
rs1001745766 -- 52,799,899(-) C/T downstream_transcript_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC101928499 Gene

Disorders for LOC101928499 Gene

No disorders were found for LOC101928499 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC101928499 Gene

Publications for LOC101928499 Gene

No publications were found for LOC101928499 Gene.

Products for LOC101928499 Gene

Sources for LOC101928499 Gene

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