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Aliases for LOC101928489 Gene

Subcategory (RNA class) for LOC101928489 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for LOC101928489 Gene

  • Uncharacterized LOC101928489 3
  • AL590428.1 5

External Ids for LOC101928489 Gene

Previous GeneCards Identifiers for LOC101928489 Gene

  • GC06U902444
  • GC06M074404

Summaries for LOC101928489 Gene

GeneCards Summary for LOC101928489 Gene

LOC101928489 (Uncharacterized LOC101928489) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC101928489 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC101928489 Gene

Genomics for LOC101928489 Gene

GeneHancer (GH) Regulatory Elements for LOC101928489 Gene

Promoters and enhancers for LOC101928489 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06I073694 Promoter/Enhancer 2 EPDnew Ensembl ENCODE dbSUPER 556.6 -0.2 -202 4.1 FOXA2 ZSCAN4 SIN3A DMAP1 ZNF48 ZNF335 ZSCAN5C FOS REST SMARCB1 CD109 LOC101928489 SLC17A5 PIR44699
GH06I073652 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 11.4 +42.1 42108 3.6 FOXA2 ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 POLR2B ZNF207 ZNF143 SLC17A5 LOC101928489 GC06P073619
GH06I073720 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 13.3 -27.2 -27232 5.1 CBFB JUN ZBED1 JUNB EBF1 ELF1 BATF ATF2 FOSL1 JUND CD109 LOC101928489 SLC17A5 CGAS EEF1A1 PIR44699
GH06I073675 Enhancer 0.9 Ensembl ENCODE 11.9 +20.4 20430 0.6 CTCF PKNOX1 ARID4B CEBPG RAD21 GATA3 SMC3 ZNF143 ZNF444 CREM SLC17A5 LOC101928489 CD109
GH06I073710 Enhancer 0.9 ENCODE dbSUPER 9 -14.7 -14728 1 NFIB JUN FOSL1 GATA3 ZNF366 POLR2A ZBTB48 RCOR1 FOS FOSL2 LOC101928489 CD109 PIR44699
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC101928489 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC101928489 Gene

Genomic Locations for LOC101928489 Gene
chr6:73,693,903-73,696,131
(GRCh38/hg38)
Size:
2,229 bases
Orientation:
Minus strand
chr6:74,403,626-74,405,854
(GRCh37/hg19)

Genomic View for LOC101928489 Gene

Genes around LOC101928489 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC101928489 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101928489 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC101928489 Gene

Proteins for LOC101928489 Gene

Post-translational modifications for LOC101928489 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101928489 Gene

Domains & Families for LOC101928489 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC101928489 Gene

Function for LOC101928489 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101928489 Gene

Localization for LOC101928489 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101928489 Gene

Pathways & Interactions for LOC101928489 Gene

SuperPathways for LOC101928489 Gene

No Data Available

Interacting Proteins for LOC101928489 Gene

Gene Ontology (GO) - Biological Process for LOC101928489 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC101928489 Gene

Drugs & Compounds for LOC101928489 Gene

No Compound Related Data Available

Transcripts for LOC101928489 Gene

mRNA/cDNA for LOC101928489 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101928489 Gene

No ASD Table

Relevant External Links for LOC101928489 Gene

GeneLoc Exon Structure for
LOC101928489

Expression for LOC101928489 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC101928489 Gene

genes like me logo Genes that share expression patterns with LOC101928489: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101928489 Gene

Orthologs for LOC101928489 Gene

Evolution for LOC101928489 Gene

ENSEMBL:
Gene Tree for LOC101928489 (if available)
TreeFam:
Gene Tree for LOC101928489 (if available)

No data available for Orthologs for LOC101928489 Gene

Paralogs for LOC101928489 Gene

No data available for Paralogs for LOC101928489 Gene

Variants for LOC101928489 Gene

Sequence variations from dbSNP and Humsavar for LOC101928489 Gene

SNP ID Clin Chr 06 pos Variation AA Info Type
rs1000310595 -- 73,693,593(-) C/G/T downstream_transcript_variant
rs1000387763 -- 73,694,404(-) T/C non_coding_transcript_variant
rs1001273571 -- 73,694,272(-) A/G non_coding_transcript_variant
rs1001390639 -- 73,696,052(-) T/C non_coding_transcript_variant
rs1002167718 -- 73,697,527(-) A/C upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC101928489 Gene

Variant ID Type Subtype PubMed ID
dgv6015n100 CNV gain 25217958
esv3576178 CNV gain 25503493

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC101928489 Gene

Disorders for LOC101928489 Gene

Additional Disease Information for LOC101928489

No disorders were found for LOC101928489 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC101928489 Gene

Publications for LOC101928489 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for LOC101928489 Gene

Sources for LOC101928489 Gene

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