LOC101928453 Gene (RNA Gene)

Uncharacterized LOC101928453

GC10P014074
GIFtS:
7

Aliases for LOC101928453 Gene

Subcategory (RNA class) for LOC101928453 Gene

lncRNA

Quality Score for this RNA gene is

14

Aliases for LOC101928453 Gene

  • Uncharacterized LOC101928453 3
  • NONHSAG005282 94
  • HSALNG0076298 169
  • Lnc-PRPF18-8 170

External Ids for LOC101928453 Gene

Previous GeneCards Identifiers for LOC101928453 Gene

  • GC10U901791

Summaries for LOC101928453 Gene

GeneCards Summary for LOC101928453 Gene

LOC101928453 (Uncharacterized LOC101928453) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC101928453 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC101928453 Gene

Genomics for LOC101928453 Gene

GeneHancer (GH) Regulatory Elements for LOC101928453 Gene

Promoters and enhancers for LOC101928453 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH10J014073 Promoter/Enhancer 1.3 Ensembl ENCODE CraniofacialAtlas 750.6 +0.1 99 2.3 GATA3 TCF7L2 ZNF217 RAD21 MNT NFIB ZNF280D SP1 NCOA3 SP7 ENSG00000235410 LOC101928453 SEPHS1 ENSG00000229751 piR-57460-039 FRMD4A
GH10J014089 Enhancer 0.8 Ensembl ENCODE 0.4 +14.3 14317 2 SP7 PKNOX1 ZIC2 ZBTB8A PRDM10 ZNF629 PATZ1 ZBTB20 ZBTB17 ZFHX2 ENSG00000229751 piR-57460-039 ENSG00000235410 LOC101928453 lnc-PRPF18-14 FRMD4A
GH10J014087 Enhancer 0.3 Ensembl 0.4 +12.8 12817 0.2 PRDM4 ENSG00000229751 piR-57460-039 ENSG00000235410 LOC101928453 lnc-PRPF18-14 FRMD4A
GH10J014084 Enhancer 0.2 Ensembl 0.4 +11.0 11016 1 piR-57460-039 ENSG00000235410 LOC101928453 lnc-PRPF18-14 FRMD4A
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC101928453 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC101928453 Gene

Genomic Locations for LOC101928453 Gene
chr10:14,074,284-14,087,881
(GRCh38/hg38)
Size:
13,598 bases
Orientation:
Plus strand

Genomic View for LOC101928453 Gene

Genes around LOC101928453 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC101928453 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101928453 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LOC101928453 Gene

Proteins for LOC101928453 Gene

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  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for LOC101928453 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101928453 Gene

Domains & Families for LOC101928453 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC101928453 Gene

Function for LOC101928453 Gene

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  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101928453 Gene

Localization for LOC101928453 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101928453 Gene

Pathways & Interactions for LOC101928453 Gene

PathCards logo

SuperPathways for LOC101928453 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC101928453 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC101928453 Gene

Drugs & Compounds for LOC101928453 Gene

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  1. Drug
No Compound Related Data Available

Transcripts for LOC101928453 Gene

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  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for LOC101928453 Gene

(1) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(11) RNACentral transcripts :
(7) LncBook transcripts :
(9) LNCipedia transcripts :
(6) NONCODE transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101928453 Gene

No ASD Table

Relevant External Links for LOC101928453 Gene

GeneLoc Exon Structure for
LOC101928453

Expression for LOC101928453 Gene

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  1. Primer
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mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC101928453 Gene

mRNA expression in normal human tissues for LOC101928453 Gene
mRNA expression by GTEx for LOC101928453 Gene
genes like me logo Genes that share expression patterns with LOC101928453: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101928453 Gene

Orthologs for LOC101928453 Gene

No data available for Orthologs and Evolution for LOC101928453 Gene

Paralogs for LOC101928453 Gene

No data available for Paralogs for LOC101928453 Gene

Variants for LOC101928453 Gene

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  1. SNP Genotyping and Copy Number Assay

Sequence variations from dbSNP and Humsavar for LOC101928453 Gene

SNP ID Clin Chr 10 pos Variation AA Info Type
rs1000061169 -- 14,072,991(+) A/C upstream_transcript_variant
rs1000576345 -- 14,076,382(+) T/C intron_variant
rs1000691238 -- 14,086,868(+) C/T intron_variant
rs1000865232 -- 14,087,533(+) C/A non_coding_transcript_variant
rs1000931721 -- 14,081,910(+) C/G intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC101928453 Gene

Variant ID Type Subtype PubMed ID
nsv528027 CNV gain 19592680
nsv549996 CNV gain 21841781

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC101928453 Gene

Disorders for LOC101928453 Gene

No disorders were found for LOC101928453 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC101928453 Gene

Publications for LOC101928453 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 56

No data available for External Links for LOC101928453 Gene

Products for LOC101928453 Gene

Sources for LOC101928453 Gene