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LOC101928446 (Uncharacterized LOC101928446) is an RNA Gene, and is affiliated with the lncRNA class.
GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
---|---|---|---|---|---|---|---|---|---|---|
GH16J082772 | Enhancer | 0.2 | Ensembl | 250.7 | -0.7 | -717 | 2 | LOC101928446 SDR42E1 RF00994-390 CDH13 | ||
GH16J082776 | Enhancer | 0.6 | Ensembl ENCODE | 0.7 | +3.5 | 3483 | 2.8 | SPI1 CREB1 MNT CEBPB | LOC101928446 piR-33614-106 CDH13 | |
GH16J082781 | Enhancer | 0.6 | Ensembl ENCODE | 0.4 | +9.5 | 9483 | 4 | NBN YBX1 SP1 POLR2A | LOC101928446 piR-33614-106 CDH13 | |
GH16J082734 | Enhancer | 0.9 | VISTA Ensembl ENCODE | 0.3 | -37.7 | -37716 | 3.2 | EBF1 BATF POLR2A RUNX3 | CDH13 RF00994-390 LOC101928446 | |
GH16J082760 | Enhancer | 0.5 | ENCODE | 0.4 | -11.7 | -11710 | 1.3 | RXRA JUND HNF4A MAX SP1 HNF4G ATF3 CEBPB YY1 | LOC101928446 RF00994-390 CDH13 |
RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
---|---|---|---|---|
URS000002E9B3_9606 | lncRNA | 4040 | 5 |
RefSeq: NR_110938, Ensembl: ENST00000567359 (view in UCSC) , LncBook: HSALNT0234369, LNCipedia: lnc-HSD17B2-2:1, NONCODE: NONHSAT143994.2, |
URS0001BD787A_9606 | lncRNA | 4037 | 1 |
LncBook: HSALNT0234369, |
Variant ID | Type | Subtype | PubMed ID |
---|---|---|---|
dgv3051n100 | CNV | gain | 25217958 |
dgv5253n54 | CNV | gain | 21841781 |
esv2751616 | CNV | gain | 17911159 |
esv3306176 | CNV | mobile element insertion | 20981092 |
esv3404617 | CNV | insertion | 20981092 |
esv3405118 | CNV | insertion | 20981092 |
esv3639372 | CNV | loss | 21293372 |
nsv1059718 | CNV | loss | 25217958 |
nsv1061288 | CNV | gain+loss | 25217958 |
nsv1063412 | CNV | gain | 25217958 |
nsv1064630 | CNV | gain | 25217958 |
nsv573367 | CNV | gain | 21841781 |
nsv573371 | CNV | loss | 21841781 |
nsv573379 | CNV | gain | 21841781 |
No disorders were found for LOC101928446 Gene.