Aliases for LOC101928446 Gene

Subcategory (RNA class) for LOC101928446 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LOC101928446 Gene

  • Uncharacterized LOC101928446 3
  • Novel Transcript 5
  • NONHSAG020123.2 91
  • Lnc-HSD17B2-2 165
  • HSALNG0113056 164
  • AC099506.1 5

External Ids for LOC101928446 Gene

Previous GeneCards Identifiers for LOC101928446 Gene

  • GC16U901568

Summaries for LOC101928446 Gene

GeneCards Summary for LOC101928446 Gene

LOC101928446 (Uncharacterized LOC101928446) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC101928446 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC101928446 Gene

Genomics for LOC101928446 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC101928446 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J082772 Enhancer 0.2 Ensembl 600.7 -0.8 -818 2.2 LOC101928446 SDR42E1 RF00994-390 CDH13
GH16J082776 Enhancer 0.6 Ensembl ENCODE 0.7 +3.3 3282 2.4 MNT CEBPB CREB1 SPI1 LOC101928446 piR-33614-106 CDH13
GH16J082734 Enhancer 1 VISTA Ensembl ENCODE 0.3 -37.8 -37761 3.1 POLR2A PKNOX1 RUNX3 BATF EBF1 BHLHE40 CDH13 RF00994-390 LOC101928446
GH16J082781 Enhancer 0.6 Ensembl ENCODE 0.4 +9.0 8982 3 POLR2A YBX1 NBN SP1 LOC101928446 piR-33614-106 CDH13
GH16J082760 Enhancer 0.5 ENCODE 0.4 -11.7 -11711 1.3 SP1 CEBPB ATF3 YY1 JUND HNF4A RXRA MAX HNF4G LOC101928446 RF00994-390 CDH13
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC101928446 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC101928446 Gene

Genomic Locations for LOC101928446 Gene
chr16:82,773,319-82,829,638
(GRCh38/hg38)
Size:
56,320 bases
Orientation:
Plus strand
chr16:82,806,924-82,863,243
(GRCh37/hg19)
Size:
56,320 bases
Orientation:
Plus strand

Genomic View for LOC101928446 Gene

Genes around LOC101928446 on UCSC Golden Path with GeneCards custom track
LOC101928446 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LOC101928446 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101928446 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC101928446 Gene

Proteins for LOC101928446 Gene

Post-translational modifications for LOC101928446 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101928446 Gene

Domains & Families for LOC101928446 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC101928446 Gene

Function for LOC101928446 Gene

Phenotypes From GWAS Catalog for LOC101928446 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101928446 Gene

Localization for LOC101928446 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101928446 Gene

Pathways & Interactions for LOC101928446 Gene

PathCards logo

SuperPathways for LOC101928446 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC101928446 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC101928446 Gene

Drugs & Compounds for LOC101928446 Gene

No Compound Related Data Available

Transcripts for LOC101928446 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC101928446 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000002E9B3_9606 lncRNA 4037 5

RefSeq: NR_110938,

Ensembl: ENST00000567359 (view in UCSC) ,

LncBook: HSALNT0234369,

LNCipedia: lnc-HSD17B2-2:1,

NONCODE: NONHSAT143994.2,

LOC101928446 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC101928446 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101928446 Gene

No ASD Table

Relevant External Links for LOC101928446 Gene

GeneLoc Exon Structure for
LOC101928446

Expression for LOC101928446 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC101928446 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC101928446

genes like me logo Genes that share expression patterns with LOC101928446: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101928446 Gene

Orthologs for LOC101928446 Gene

Evolution for LOC101928446 Gene

ENSEMBL:
Gene Tree for LOC101928446 (if available)
TreeFam:
Gene Tree for LOC101928446 (if available)

No data available for Orthologs for LOC101928446 Gene

Paralogs for LOC101928446 Gene

No data available for Paralogs for LOC101928446 Gene

Variants for LOC101928446 Gene

Additional dbSNP identifiers (rs#s) for LOC101928446 Gene

Structural Variations from Database of Genomic Variants (DGV) for LOC101928446 Gene

Variant ID Type Subtype PubMed ID
dgv3051n100 CNV gain 25217958
dgv5253n54 CNV gain 21841781
esv2751616 CNV gain 17911159
esv3306176 CNV mobile element insertion 20981092
esv3404617 CNV insertion 20981092
esv3405118 CNV insertion 20981092
esv3639372 CNV loss 21293372
nsv1059718 CNV loss 25217958
nsv1061288 CNV gain+loss 25217958
nsv1063412 CNV gain 25217958
nsv1064630 CNV gain 25217958
nsv573367 CNV gain 21841781
nsv573371 CNV loss 21841781
nsv573379 CNV gain 21841781

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Variation tolerance and Additional Variant Information for LOC101928446 Gene

Disorders for LOC101928446 Gene

Additional Disease Information for LOC101928446

No disorders were found for LOC101928446 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC101928446 Gene

Publications for LOC101928446 Gene

  1. Genome-wide association analyses identifies a susceptibility locus for tuberculosis on chromosome 18q11.2. (PMID: 20694014) Thye T … Hill AVS (Nature genetics 2010) 3

No data available for Mastermind for LOC101928446 Gene

Products for LOC101928446 Gene

Sources for LOC101928446 Gene