Aliases for LOC101928436 Gene

Data sources for LOC101928436 Gene:

RNA type for LOC101928436 Gene

lncRNA

Aliases for LOC101928436 Gene

External Ids for LOC101928436 Gene

Previous GeneCards Identifiers for LOC101928436 Gene

  • GC01U903960
  • GC01M103961

Summaries for LOC101928436 Gene

GeneCards Summary for LOC101928436 Gene

LOC101928436 (Uncharacterized LOC101928436) is an RNA Gene, and is affiliated with the lncRNA class.

Rfam classification for LOC101928436 Gene

Additional gene information for LOC101928436 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for LOC101928436 Gene

Genomics for LOC101928436 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC101928436 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J103524 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 250.7 -1.1 -1084 4.4 ZNF600 IKZF1 POLR2A BRCA1 YY1 MXD4 SMAD5 SIN3A CHD2 MBD2 LOC101928436 RNPC3 AMY2B piR-31937-009 HSALNG0005632
GH01J103561 Promoter/Enhancer 0.9 Ensembl ENCODE 12.3 -36.4 -36384 1 FOXA2 RXRA ZBTB33 HNF4A FOXA1 RBBP5 SP1 RAD51 RUNX3 RELB HSALNG0005637 HSALNG0005638 AMY2B LOC101928436 RN7SKP285 RNPC3 ACTG1P4 AMY2A
GH01J103503 Enhancer 0.2 Ensembl 11.8 +21.5 21516 0.8 LOC101928436 RNPC3 HSALNG0005631 HSALNG0005632 COL11A1
GH01J103515 Enhancer 0.6 Ensembl ENCODE 0.4 +8.7 8728 2 BATF JUND ATF2 JUNB PKNOX1 EP300 AMY2B COL11A1 HSALNG0005632 LOC101928436 RNPC3 HSALNG0005631
GH01J103514 Enhancer 0.5 Ensembl 0.4 +10.4 10372 0.5 ZNF654 CTCF REST TRIM22 RAD21 SMC3 COL11A1 AMY2B HSALNG0005632 HSALNG0005631 RNPC3 LOC101928436
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC101928436 on the GeneHancer Hub at the UCSC Golden Path

Cistromic (ChIP-Seq) regulation report from SPP (The Signaling Pathways Project) for LOC101928436

Genomic Locations for LOC101928436 Gene

Latest Assembly
chr1:103,415,980-103,525,517
(GRCh38/hg38)
Size:
109,538 bases
Orientation:
Minus strand

Previous Assembly
chr1:103,959,602-104,068,130
(GRCh37/hg19 by Entrez Gene)
Size:
108,529 bases
Orientation:
Minus strand

chr1:103,960,701-104,068,105
(GRCh37/hg19 by Ensembl)
Size:
107,405 bases
Orientation:
Minus strand

Genomic View for LOC101928436 Gene

Genes around LOC101928436 on UCSC Golden Path with GeneCards custom track
LOC101928436 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LOC101928436 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101928436 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC101928436 Gene

Proteins for LOC101928436 Gene

Post-translational modifications for LOC101928436 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101928436 Gene

Domains & Families for LOC101928436 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC101928436 Gene

Function for LOC101928436 Gene

Phenotypes From GWAS Catalog for LOC101928436 Gene

CRISPR products for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101928436 Gene

Localization for LOC101928436 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101928436 Gene

Pathways & Interactions for LOC101928436 Gene

PathCards logo

SuperPathways for LOC101928436 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC101928436 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC101928436 Gene

Drugs & Compounds for LOC101928436 Gene

No Compound Related Data Available

Transcripts for LOC101928436 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC101928436 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS0000EECE56_9606 lncRNA 2647 1

Ensembl: ENST00000662345 (view in UCSC) ,

URS0000EF4EBE_9606 lncRNA 2079 1

Ensembl: ENST00000668150 (view in UCSC) ,

URS0000EF14AE_9606 lncRNA 1980 1

Ensembl: ENST00000447322 (view in UCSC) ,

URS0001BBE511_9606 lncRNA 1771 1

RefSeq: NR_168319,

URS0000EF6236_9606 lncRNA 1731 1

Ensembl: ENST00000444810 (view in UCSC) ,

LOC101928436 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC101928436 Gene

3 REFSEQ mRNAs :
1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101928436 Gene

No ASD Table

Relevant External Links for LOC101928436 Gene

GeneLoc Exon Structure for
LOC101928436

Expression for LOC101928436 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC101928436 Gene

mRNA differential expression in normal tissues according to GTEx for LOC101928436 Gene

This gene is overexpressed in Testis (x10.9), Brain - Anterior cingulate cortex (BA24) (x7.5), Brain - Frontal Cortex (BA9) (x4.6), and Brain - Cortex (x4.5).
genes like me logo Genes that share expression patterns with LOC101928436: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101928436 Gene

Orthologs for LOC101928436 Gene

Evolution for LOC101928436 Gene

ENSEMBL:
Gene Tree for LOC101928436 (if available)
TreeFam:
Gene Tree for LOC101928436 (if available)

No data available for Orthologs for LOC101928436 Gene

Paralogs for LOC101928436 Gene

No data available for Paralogs for LOC101928436 Gene

Variants for LOC101928436 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LOC101928436 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for LOC101928436 Gene

Variant ID Type Subtype PubMed ID
dgv133n106 CNV deletion 24896259
dgv14n21 CNV gain 19592680
dgv213n100 CNV gain 25217958
dgv390n54 CNV loss 21841781
dgv391n54 CNV loss 21841781
esv27438 CNV gain 19812545
esv2758954 CNV gain+loss 17122850
esv3052678 CNV deletion 24192839
esv3583026 CNV gain 25503493
esv3587011 CNV loss 21293372
nsv1078597 CNV deletion 25765185
nsv428157 CNV gain+loss 18775914
nsv523177 CNV gain 19592680
nsv526367 CNV gain 19592680
nsv546939 CNV loss 21841781
nsv546940 CNV loss 21841781
nsv546944 CNV loss 21841781
nsv830904 CNV loss 17160897
nsv830915 CNV gain+loss 17160897
nsv950525 CNV deletion 24416366

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Variation tolerance and Additional Variant Information for LOC101928436 Gene

Disorders for LOC101928436 Gene

No disorders were found for LOC101928436 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC101928436 Gene

Publications for LOC101928436 Gene

  1. Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population. (PMID: 23251661) Comuzzie AG … Butte NF (PloS one 2012) 3

No data available for Mastermind for LOC101928436 Gene

Products for LOC101928436 Gene

Sources for LOC101928436 Gene