Aliases for LOC101928417 Gene

Data sources for LOC101928417 Gene:

Subcategory (RNA class) for LOC101928417 Gene

lncRNA

Aliases for LOC101928417 Gene

External Ids for LOC101928417 Gene

Previous GeneCards Identifiers for LOC101928417 Gene

  • GC16U901652

Summaries for LOC101928417 Gene

GeneCards Summary for LOC101928417 Gene

LOC101928417 (Uncharacterized LOC101928417) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC101928417 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC101928417 Gene

Genomics for LOC101928417 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC101928417 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J082992 Enhancer 0.2 Ensembl 250.7 -0.4 -403 0.2 LOC101928417 CDH13 piR-50444-157 HSBP1
GH16J082990 Enhancer 1 FANTOM5 Ensembl ENCODE 0.7 -3.6 -3637 6.1 ZNF513 MAFF JUND ZNF316 SPI1 YBX1 MAFK MAFG LARP7 CREB1 ENSG00000259914 CDH13 LOC101928417 piR-50444-157 HSBP1
GH16J083002 Enhancer 0.3 Ensembl 0.4 -12.7 -12703 3.6 NFE2 NFE2L2 CDH13 MPHOSPH6 LOC101928417 piR-50444-157 HSBP1
GH16J082943 Enhancer 0.6 Ensembl ENCODE 0.3 +45.1 45098 3.2 MAX CEBPB NR2F2 piR-35674-200 LOC101928417 CDH13 HSBP1
GH16J082936 Enhancer 0.6 Ensembl ENCODE 0.2 +53.1 53097 2.8 MAFK BHLHE40 NFE2L2 FOS piR-35674-200 LOC101928417 CDH13 HSBP1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC101928417 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC101928417 Gene

Latest Assembly
chr16:82,953,229-82,990,298
(GRCh38/hg38)
Size:
37,070 bases
Orientation:
Minus strand

Previous Assembly
chr16:82,986,835-83,023,903
(GRCh37/hg19 by Entrez Gene)
Size:
37,069 bases
Orientation:
Minus strand

chr16:82,986,835-83,023,903
(GRCh37/hg19 by Ensembl)
Size:
37,069 bases
Orientation:
Minus strand

Genomic View for LOC101928417 Gene

Genes around LOC101928417 on UCSC Golden Path with GeneCards custom track
LOC101928417 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LOC101928417 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101928417 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC101928417 Gene

Proteins for LOC101928417 Gene

Post-translational modifications for LOC101928417 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101928417 Gene

Domains & Families for LOC101928417 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC101928417 Gene

Function for LOC101928417 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101928417 Gene

Localization for LOC101928417 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101928417 Gene

Pathways & Interactions for LOC101928417 Gene

PathCards logo

SuperPathways for LOC101928417 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC101928417 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC101928417 Gene

Drugs & Compounds for LOC101928417 Gene

No Compound Related Data Available

Transcripts for LOC101928417 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC101928417 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000510713_9606 lncRNA 1496 5

RefSeq: NR_110937,

Ensembl: ENST00000565238 (view in UCSC) ,

LncBook: HSALNT0234372,

LNCipedia: lnc-MPHOSPH6-3:1,

NONCODE: NONHSAT143997.2,

URS0001BDE932_9606 lncRNA 1493 1

LncBook: HSALNT0234372,

LOC101928417 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC101928417 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101928417 Gene

No ASD Table

Relevant External Links for LOC101928417 Gene

GeneLoc Exon Structure for
LOC101928417

Expression for LOC101928417 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC101928417 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC101928417

genes like me logo Genes that share expression patterns with LOC101928417: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101928417 Gene

Orthologs for LOC101928417 Gene

Evolution for LOC101928417 Gene

ENSEMBL:
Gene Tree for LOC101928417 (if available)
TreeFam:
Gene Tree for LOC101928417 (if available)

No data available for Orthologs for LOC101928417 Gene

Paralogs for LOC101928417 Gene

No data available for Paralogs for LOC101928417 Gene

Variants for LOC101928417 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LOC101928417 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for LOC101928417 Gene

Variant ID Type Subtype PubMed ID
dgv3051n100 CNV gain 25217958
dgv3052n100 CNV loss 25217958
dgv5253n54 CNV gain 21841781
dgv5255n54 CNV loss 21841781
esv22422 CNV loss 19812545
esv2670466 CNV deletion 23128226
esv2714802 CNV deletion 23290073
esv3553776 CNV deletion 23714750
esv3582395 CNV loss 25503493
esv3892918 CNV loss 25118596
nsv1061288 CNV gain+loss 25217958
nsv1070360 CNV deletion 25765185
nsv1109026 CNV deletion 24896259
nsv522570 CNV loss 19592680
nsv573367 CNV gain 21841781
nsv573371 CNV loss 21841781

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Variation tolerance and Additional Variant Information for LOC101928417 Gene

Disorders for LOC101928417 Gene

Additional Disease Information for LOC101928417

Open Targets Platform
Open Targets Platform

No disorders were found for LOC101928417 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC101928417 Gene

Publications for LOC101928417 Gene

No publications were found for LOC101928417 Gene.

No data available for Mastermind for LOC101928417 Gene

Products for LOC101928417 Gene

Sources for LOC101928417 Gene