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Aliases for LOC101928417 Gene
Subcategory (RNA class) for LOC101928417 Gene
lncRNA
Number of RNA Genes sources:
3 / 17
Aliases for LOC101928417 Gene
External Ids for LOC101928417 Gene
- Entrez Gene: 101928417
- Ensembl: ENSG00000260832
Previous GeneCards Identifiers for LOC101928417 Gene
- GC16U901652
Summaries for LOC101928417 Gene
GeneCards Summary for LOC101928417 Gene
LOC101928417 (Uncharacterized LOC101928417) is an RNA Gene, and is affiliated with the lncRNA class.
Additional gene information for LOC101928417 Gene
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC101928417 Gene
Genomics for LOC101928417 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for LOC101928417 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH16J082991 | Enhancer | 0.4 | Ensembl | 600.7 | +0.1 | 97 | 0.4 | CEBPB FOS JUND | LOC101928417 CDH13 piR-35674-200 HSBP1 | |
| GH16J082990 | Enhancer | 0.5 | ENCODE | 0.7 | -2.4 | -2404 | 3.7 | ZNF316 MAFF MAFK MAFG POLR2A SPI1 SMARCA4 EMSY | CDH13 LOC101928417 piR-50444-157 HSBP1 | |
| GH16J082994 | Enhancer | 0.8 | FANTOM5 ENCODE | 0.4 | -5.7 | -5650 | 2 | CREB1 ZNF311 JUND TSC22D4 FOS NR2F2 ZNF513 YY1 JUN LARP7 | ENSG00000259914 LOC101928417 piR-50444-157 CDH13 HSBP1 | |
| GH16J083002 | Enhancer | 0.5 | Ensembl | 0.4 | -13.1 | -13103 | 4.4 | NFE2 USF1 HCFC1 JUN ZNF143 NFE2L2 USF2 SIX5 | CDH13 MPHOSPH6 LOC101928417 piR-50444-157 HSBP1 | |
| GH16J082944 | Enhancer | 0.6 | Ensembl ENCODE | 0.3 | +44.9 | 44897 | 2.8 | NR2F2 JUN MAX | piR-35674-200 LOC101928417 CDH13 HSBP1 |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around LOC101928417 on the GeneHancer Hub at the UCSC Golden Path
Genomic Locations for LOC101928417 Gene
Genomic Locations for LOC101928417 Gene
- chr16:82,953,230-82,990,298
- (GRCh38/hg38)
- Size:
- 37,069 bases
- Orientation:
- Minus strand
- chr16:82,986,835-83,023,903
- (GRCh37/hg19)
- Size:
- 37,069 bases
- Orientation:
- Minus strand
Genomic View for LOC101928417 Gene
Genes around LOC101928417 on UCSC Golden Path with GeneCards custom track
LOC101928417 in the GeneCards ncRNA compendium hub on the UCSC Golden Path
- Cytogenetic band:
-
- 16q23.3 by Entrez Gene
- 16q23.3 by Ensembl
LOC101928417 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for LOC101928417 Gene
Proteins for LOC101928417 Gene
Post-translational modifications for LOC101928417 Gene
No Post-translational modifications
Antibody Products
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LOC101928417
- Origene Custom Protein Services for LOC101928417
No data available for DME Specific Peptides for LOC101928417 Gene
Domains & Families for LOC101928417 Gene
No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC101928417 Gene
Function for LOC101928417 Gene
Phenotypes From GWAS Catalog for LOC101928417 Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
miRNA Products
Inhibitory RNA Products
Clone Products
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101928417 Gene
Localization for LOC101928417 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101928417 Gene
Transcripts for LOC101928417 Gene
Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC101928417 Gene
| RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
|---|---|---|---|---|
| URS0000510713_9606 | lncRNA | 1493 | 5 |
RefSeq: NR_110937, Ensembl: ENST00000565238 (view in UCSC) , LncBook: HSALNT0234372, LNCipedia: lnc-MPHOSPH6-3:1, NONCODE: NONHSAT143997.2, |
LOC101928417 in the GeneCards ncRNA compendium hub on the UCSC Golden Path
Additional transcripts not in RNAcentral for LOC101928417 Gene
- 1 NCBI additional mRNA sequence :
miRNA Products
Inhibitory RNA Products
Clone Products
Relevant External Links for LOC101928417 Gene
- GeneLoc Exon Structure for
- LOC101928417
Expression for LOC101928417 Gene
Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC101928417
Primer Products
Gene Expression Assay Products
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101928417 Gene
Orthologs for LOC101928417 Gene
No data available for Orthologs for LOC101928417 Gene
Paralogs for LOC101928417 Gene
No data available for Paralogs for LOC101928417 Gene
Variants for LOC101928417 Gene
| Variant ID | Type | Subtype | PubMed ID |
|---|---|---|---|
| dgv3051n100 | CNV | gain | 25217958 |
| dgv3052n100 | CNV | loss | 25217958 |
| dgv5253n54 | CNV | gain | 21841781 |
| dgv5255n54 | CNV | loss | 21841781 |
| esv22422 | CNV | loss | 19812545 |
| esv2670466 | CNV | deletion | 23128226 |
| esv2714802 | CNV | deletion | 23290073 |
| esv3553776 | CNV | deletion | 23714750 |
| esv3582395 | CNV | loss | 25503493 |
| esv3892918 | CNV | loss | 25118596 |
| nsv1061288 | CNV | gain+loss | 25217958 |
| nsv1070360 | CNV | deletion | 25765185 |
| nsv1109026 | CNV | deletion | 24896259 |
| nsv522570 | CNV | loss | 19592680 |
| nsv573367 | CNV | gain | 21841781 |
| nsv573371 | CNV | loss | 21841781 |
SNP Genotyping and Copy Number Assay Products
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Variation tolerance and Additional Variant Information for LOC101928417 Gene
Disorders for LOC101928417 Gene
Additional Disease Information for LOC101928417
No disorders were found for LOC101928417 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC101928417 Gene
Publications for LOC101928417 Gene
No publications were found for LOC101928417 Gene.
No data available for Mastermind for LOC101928417 Gene
Products for LOC101928417 Gene
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- Custom Assay Services
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- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
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Sources for LOC101928417 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) Genetics Home Reference
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNACentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Signalway Antibody
- (175) Open Targets Platform
- (176) 5SRRNADB
- (177) snoDB
- (178) MirGeneDB