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Aliases for LOC101928417 Gene
Subcategory (RNA class) for LOC101928417 Gene
lncRNA
Aliases for LOC101928417 Gene
External Ids for LOC101928417 Gene
- NCBI Entrez Gene: 101928417
- Ensembl: ENSG00000260832
Previous GeneCards Identifiers for LOC101928417 Gene
- GC16U901652
Summaries for LOC101928417 Gene
GeneCards Summary for LOC101928417 Gene
LOC101928417 (Uncharacterized LOC101928417) is an RNA Gene, and is affiliated with the lncRNA class.
Additional gene information for LOC101928417 Gene
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC101928417 Gene
Genomics for LOC101928417 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for LOC101928417 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH16J082992 | Enhancer | 0.2 | Ensembl | 250.7 | -0.4 | -403 | 0.2 | LOC101928417 CDH13 piR-50444-157 HSBP1 | ||
| GH16J082990 | Enhancer | 1 | FANTOM5 Ensembl ENCODE | 0.7 | -3.6 | -3637 | 6.1 | ZNF513 MAFF JUND ZNF316 SPI1 YBX1 MAFK MAFG LARP7 CREB1 | ENSG00000259914 CDH13 LOC101928417 piR-50444-157 HSBP1 | |
| GH16J083002 | Enhancer | 0.3 | Ensembl | 0.4 | -12.7 | -12703 | 3.6 | NFE2 NFE2L2 | CDH13 MPHOSPH6 LOC101928417 piR-50444-157 HSBP1 | |
| GH16J082943 | Enhancer | 0.6 | Ensembl ENCODE | 0.3 | +45.1 | 45098 | 3.2 | MAX CEBPB NR2F2 | piR-35674-200 LOC101928417 CDH13 HSBP1 | |
| GH16J082936 | Enhancer | 0.6 | Ensembl ENCODE | 0.2 | +53.1 | 53097 | 2.8 | MAFK BHLHE40 NFE2L2 FOS | piR-35674-200 LOC101928417 CDH13 HSBP1 |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around LOC101928417 on the GeneHancer Hub at the UCSC Golden Path
Genomic Locations for LOC101928417 Gene
Latest Assembly
- chr16:82,953,229-82,990,298
- (GRCh38/hg38)
- Size:
- 37,070 bases
- Orientation:
- Minus strand
Previous Assembly
- chr16:82,986,835-83,023,903
- (GRCh37/hg19 by Entrez Gene)
- Size:
- 37,069 bases
- Orientation:
- Minus strand
- chr16:82,986,835-83,023,903
- (GRCh37/hg19 by Ensembl)
- Size:
- 37,069 bases
- Orientation:
- Minus strand
Genomic View for LOC101928417 Gene
Genes around LOC101928417 on UCSC Golden Path with GeneCards custom track
LOC101928417 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
- Cytogenetic band:
-
- 16q23.3 by Entrez Gene
- 16q23.3 by Ensembl
LOC101928417 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for LOC101928417 Gene
Proteins for LOC101928417 Gene
Post-translational modifications for LOC101928417 Gene
No Post-translational modifications
No data available for DME Specific Peptides for LOC101928417 Gene
Domains & Families for LOC101928417 Gene
No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC101928417 Gene
Function for LOC101928417 Gene
Phenotypes From GWAS Catalog for LOC101928417 Gene
CRISPR products for research
Inhibitory RNAs for research
Clone products for research
Cell Lines for research
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101928417 Gene
Localization for LOC101928417 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101928417 Gene
Transcripts for LOC101928417 Gene
Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC101928417 Gene
| RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
|---|---|---|---|---|
| URS0000510713_9606 | lncRNA | 1496 | 5 |
RefSeq: NR_110937, Ensembl: ENST00000565238 (view in UCSC) , LncBook: HSALNT0234372, LNCipedia: lnc-MPHOSPH6-3:1, NONCODE: NONHSAT143997.2, |
| URS0001BDE932_9606 | lncRNA | 1493 | 1 |
LncBook: HSALNT0234372, |
LOC101928417 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
Additional transcripts not in RNAcentral for LOC101928417 Gene
- 1 NCBI additional mRNA sequence :
CRISPR products for research
Inhibitory RNAs for research
Clone products for research
Relevant External Links for LOC101928417 Gene
- GeneLoc Exon Structure for
- LOC101928417
Expression for LOC101928417 Gene
Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC101928417
Gene Expression Assays for research
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101928417 Gene
Orthologs for LOC101928417 Gene
No data available for Orthologs for LOC101928417 Gene
Paralogs for LOC101928417 Gene
No data available for Paralogs for LOC101928417 Gene
Variants for LOC101928417 Gene
All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).
| Variant ID | Type | Subtype | PubMed ID |
|---|---|---|---|
| dgv3051n100 | CNV | gain | 25217958 |
| dgv3052n100 | CNV | loss | 25217958 |
| dgv5253n54 | CNV | gain | 21841781 |
| dgv5255n54 | CNV | loss | 21841781 |
| esv22422 | CNV | loss | 19812545 |
| esv2670466 | CNV | deletion | 23128226 |
| esv2714802 | CNV | deletion | 23290073 |
| esv3553776 | CNV | deletion | 23714750 |
| esv3582395 | CNV | loss | 25503493 |
| esv3892918 | CNV | loss | 25118596 |
| nsv1061288 | CNV | gain+loss | 25217958 |
| nsv1070360 | CNV | deletion | 25765185 |
| nsv1109026 | CNV | deletion | 24896259 |
| nsv522570 | CNV | loss | 19592680 |
| nsv573367 | CNV | gain | 21841781 |
| nsv573371 | CNV | loss | 21841781 |
SNP Genotyping and Copy Number Assays for research
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Variation tolerance and Additional Variant Information for LOC101928417 Gene
Disorders for LOC101928417 Gene
Additional Disease Information for LOC101928417
- Open Targets Platform
- Open Targets Platform
No disorders were found for LOC101928417 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC101928417 Gene
Publications for LOC101928417 Gene
No publications were found for LOC101928417 Gene.
No data available for Mastermind for LOC101928417 Gene
Products for LOC101928417 Gene
- Browse OriGene Antibodies
- Custom Antibody Services
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- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LOC101928417
- Origene Custom Protein Services for LOC101928417
- Browse OriGene Inhibitory RNA Products For LOC101928417
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for LOC101928417
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For LOC101928417
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
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- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for LOC101928417
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for LOC101928417
- Search GeneCopoeia for miRNA 3'UTR Target clone products for LOC101928417
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for LOC101928417
Sources for LOC101928417 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM® (Updated: 05-Mar-2021)
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) MedlinePlus Genetics
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNAcentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Open Targets Platform
- (175) 5SRRNADB
- (176) snoDB
- (177) MirGeneDB