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Aliases for LOC101928404 Gene

Subcategory (RNA class) for LOC101928404 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for LOC101928404 Gene

  • Uncharacterized LOC101928404 3
  • AL499616.1 5

External Ids for LOC101928404 Gene

Previous GeneCards Identifiers for LOC101928404 Gene

  • GC01U903865

Summaries for LOC101928404 Gene

GeneCards Summary for LOC101928404 Gene

LOC101928404 (Uncharacterized LOC101928404) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC101928404 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC101928404 Gene

Genomics for LOC101928404 Gene

GeneHancer (GH) Regulatory Elements for LOC101928404 Gene

Promoters and enhancers for LOC101928404 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01I163162 Enhancer 0.4 ENCODE 550.8 +1.1 1079 0.9 POLR2A FOXP2 LOC101928404 LOC100113374 RGS5
GH01I163320 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE 9.5 +160.5 160485 3.1 CLOCK MLX ZFP64 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF416 NUF2 ENSG00000232995 RGS5 ENSG00000272574 DDR2 RGS4 UAP1 LOC101928404 LOC100422212
GH01I163201 Promoter/Enhancer 1.2 EPDnew Ensembl ENCODE 11.2 +41.2 41169 2.3 SP1 POLR2A SIN3A RCOR1 CHD2 RGS5 LOC101928404 RGS4 ENSG00000232995 LOC100113374
GH01I162872 Enhancer 1.2 Ensembl ENCODE dbSUPER 10.6 -287.7 -287651 2.2 ELF3 CTCF SOX13 TFAP4 FOXA2 ZNF792 SAP130 RARA YY1 GATA3 LOC101928404 RGS4 CCDC190 ENSG00000227667
GH01I163195 Enhancer 0.7 ENCODE 11.5 +34.8 34815 1.7 HDAC1 JUN TEAD4 ZMYM3 FOSL1 CCNT2 CBFA2T2 RCOR1 NFE2 CHD2 LOC101928404 RGS5 NUF2 ENSG00000232995 LOC100113374
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC101928404 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC101928404 Gene

Genomic Locations for LOC101928404 Gene
chr1:163,161,675-163,213,023
(GRCh38/hg38)
Size:
51,349 bases
Orientation:
Plus strand
chr1:163,131,465-163,182,813
(GRCh37/hg19)

Genomic View for LOC101928404 Gene

Genes around LOC101928404 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC101928404 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101928404 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC101928404 Gene

Proteins for LOC101928404 Gene

Post-translational modifications for LOC101928404 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101928404 Gene

Domains & Families for LOC101928404 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC101928404 Gene

Function for LOC101928404 Gene

Phenotypes From GWAS Catalog for LOC101928404 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101928404 Gene

Localization for LOC101928404 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101928404 Gene

Pathways & Interactions for LOC101928404 Gene

SuperPathways for LOC101928404 Gene

No Data Available

Interacting Proteins for LOC101928404 Gene

Gene Ontology (GO) - Biological Process for LOC101928404 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC101928404 Gene

Drugs & Compounds for LOC101928404 Gene

No Compound Related Data Available

Transcripts for LOC101928404 Gene

mRNA/cDNA for LOC101928404 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101928404 Gene

No ASD Table

Relevant External Links for LOC101928404 Gene

GeneLoc Exon Structure for
LOC101928404

Expression for LOC101928404 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC101928404 Gene

genes like me logo Genes that share expression patterns with LOC101928404: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101928404 Gene

Orthologs for LOC101928404 Gene

Evolution for LOC101928404 Gene

ENSEMBL:
Gene Tree for LOC101928404 (if available)
TreeFam:
Gene Tree for LOC101928404 (if available)

No data available for Orthologs for LOC101928404 Gene

Paralogs for LOC101928404 Gene

No data available for Paralogs for LOC101928404 Gene

Variants for LOC101928404 Gene

Sequence variations from dbSNP and Humsavar for LOC101928404 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000018021 -- 163,170,025(+) A/T intron_variant
rs1000032625 -- 163,184,705(+) G/A intron_variant
rs1000310323 -- 163,191,559(+) G/A intron_variant
rs1000345850 -- 163,197,690(+) T/C intron_variant
rs1000392417 -- 163,204,722(+) T/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC101928404 Gene

Variant ID Type Subtype PubMed ID
esv3890704 CNV loss 25118596
nsv1137820 CNV deletion 24896259

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC101928404 Gene

Disorders for LOC101928404 Gene

Additional Disease Information for LOC101928404

No disorders were found for LOC101928404 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC101928404 Gene

Publications for LOC101928404 Gene

  1. Genome-wide association study of liver enzymes in korean children. (PMID: 24124411) Park TJ … Lee JY (Genomics & informatics 2013) 3 58
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for LOC101928404 Gene

Sources for LOC101928404 Gene

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