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Aliases for LOC101928398 Gene

Subcategory (RNA class) for LOC101928398 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC101928398 Gene

  • Uncharacterized LOC101928398 3

External Ids for LOC101928398 Gene

Previous GeneCards Identifiers for LOC101928398 Gene

  • GC21U900487

Summaries for LOC101928398 Gene

GeneCards Summary for LOC101928398 Gene

LOC101928398 (Uncharacterized LOC101928398) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC101928398 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC101928398 Gene

Genomics for LOC101928398 Gene

GeneHancer (GH) Regulatory Elements for LOC101928398 Gene

Promoters and enhancers for LOC101928398 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH21J038856 Enhancer 0.9 Ensembl ENCODE 600.7 +0.7 662 4.4 ZFX CBFA2T2 ZNF148 TRIM24 SMARCA4 RFX1 PKNOX1 GABPA EP300 SOX6 LOC101928398 RPSAP64 ENSG00000229986 ENSG00000229925
GH21J038851 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 0.4 -5.0 -5038 6.2 ZFX ZKSCAN8 CBFA2T2 CEBPG ZSCAN21 BACH1 TRIM24 HNF1A ZNF639 SMARCA4 ETS2 RPSAP64 ENSG00000229986 LOC101928398
GH21J038847 Enhancer 1.2 Ensembl ENCODE dbSUPER 0.4 -9.6 -9567 1.5 ZFX MLLT1 BACH1 SP1 ZNF639 RXRA PKNOX1 CEBPB MGA ZNF766 ENSG00000229986 HMGN1 LOC101928398
GH21J038862 Enhancer 0.7 Ensembl ENCODE 0.4 +6.8 6762 6.6 HES1 RUNX3 PKNOX1 ZC3H11A POLR2A MYC MAX RPSAP64 HMGN1 ENSG00000229986 ETS2 LOC101928398 ENSG00000229925 ENSG00000205622
GH21J038876 Enhancer 0.8 FANTOM5 Ensembl 0.4 +17.9 17862 2.4 ZSCAN21 RFX1 BMI1 CEBPB CEBPG PRDM6 PRDM10 ETS2 ERG ENSG00000229925 LOC101928398 ENSG00000205622
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC101928398 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC101928398 Gene

Genomic Locations for LOC101928398 Gene
chr21:38,857,539-38,858,862
(GRCh38/hg38)
Size:
1,324 bases
Orientation:
Plus strand

Genomic View for LOC101928398 Gene

Genes around LOC101928398 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC101928398 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101928398 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC101928398 Gene

Proteins for LOC101928398 Gene

Post-translational modifications for LOC101928398 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101928398 Gene

Domains & Families for LOC101928398 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC101928398 Gene

Function for LOC101928398 Gene

Phenotypes From GWAS Catalog for LOC101928398 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101928398 Gene

Localization for LOC101928398 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101928398 Gene

Pathways & Interactions for LOC101928398 Gene

PathCards logo

SuperPathways for LOC101928398 Gene

No Data Available

Interacting Proteins for LOC101928398 Gene

Gene Ontology (GO) - Biological Process for LOC101928398 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC101928398 Gene

Drugs & Compounds for LOC101928398 Gene

No Compound Related Data Available

Transcripts for LOC101928398 Gene

mRNA/cDNA for LOC101928398 Gene

(2) Additional mRNA sequences :
(1) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101928398 Gene

No ASD Table

Relevant External Links for LOC101928398 Gene

GeneLoc Exon Structure for
LOC101928398

Expression for LOC101928398 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101928398 Gene

Orthologs for LOC101928398 Gene

No data available for Orthologs and Evolution for LOC101928398 Gene

Paralogs for LOC101928398 Gene

No data available for Paralogs for LOC101928398 Gene

Variants for LOC101928398 Gene

Sequence variations from dbSNP and Humsavar for LOC101928398 Gene

SNP ID Clin Chr 21 pos Variation AA Info Type
rs1000293977 -- 38,856,162(+) G/A upstream_transcript_variant
rs1000665461 -- 38,856,018(+) G/A/T upstream_transcript_variant
rs1001535838 -- 38,855,599(+) G/A/T upstream_transcript_variant
rs1001805818 -- 38,855,960(+) C/G/T upstream_transcript_variant
rs1003002804 -- 38,855,902(+) G/A upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC101928398 Gene

Variant ID Type Subtype PubMed ID
nsv587477 CNV loss 21841781

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC101928398 Gene

Disorders for LOC101928398 Gene

No disorders were found for LOC101928398 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC101928398 Gene

Publications for LOC101928398 Gene

No publications were found for LOC101928398 Gene.

No data available for External Links for LOC101928398 Gene

Products for LOC101928398 Gene

Sources for LOC101928398 Gene

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