LOC101928398 Gene (RNA Gene)

Uncharacterized LOC101928398

GC21P038857
GIFtS:
8
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Aliases for LOC101928398 Gene

Subcategory (RNA class) for LOC101928398 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LOC101928398 Gene

  • Uncharacterized LOC101928398 3
  • Novel Transcript 5
  • NONHSAG032845.2 91
  • HSALNG0133090 164
  • AP001042.3 5
  • Lnc-ETS2-2 165

External Ids for LOC101928398 Gene

Previous GeneCards Identifiers for LOC101928398 Gene

  • GC21U900487

Summaries for LOC101928398 Gene

GeneCards Summary for LOC101928398 Gene

LOC101928398 (Uncharacterized LOC101928398) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC101928398 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC101928398 Gene

Genomics for LOC101928398 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for LOC101928398 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH21J038856 Enhancer 0.9 Ensembl ENCODE 600.7 -0.2 -207 1 RFX1 PKNOX1 SOX6 FOXJ2 EP300 MGA CTBP1 NCOR1 RELA ZNF592 LOC101928398 RPSAP64 ENSG00000229986 ETS2 ENSG00000205622 PSMG1
GH21J038859 Enhancer 0.6 Ensembl ENCODE 600.7 +1.2 1193 0.6 JUND GABPA ATF3 ATF2 GABPB1 ATF7 LOC101928398 RPSAP64 ENSG00000229986 ENSG00000229925 ETS2 ENSG00000205622 PSMG1
GH21J038858 Enhancer 0.4 Ensembl ENCODE 600.7 +0.6 626 0.3 GABPA LOC101928398 RPSAP64 ENSG00000229986 ENSG00000229925 ETS2 ENSG00000205622 PSMG1
GH21J038851 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 0.4 -5.3 -5308 5.2 CEBPG CREB1 GATAD2A ZNF629 LEF1 IKZF1 KDM1A ZNF7 JUND PKNOX1 ETS2 RPSAP64 ENSG00000229986 LOC101928398 ENSG00000205622 PSMG1
GH21J038847 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.4 -9.5 -9535 1.5 PKNOX1 SP1 MGA ZNF766 CEBPB E2F5 NR2C2 ATF3 YY1 MEF2D ENSG00000229986 HMGN1 LOC101928398 ETS2 ENSG00000205622 PSMG1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC101928398 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC101928398 Gene

Genomic Locations for LOC101928398 Gene
chr21:38,857,508-38,858,862
(GRCh38/hg38)
Size:
1,355 bases
Orientation:
Plus strand

Genomic View for LOC101928398 Gene

Genes around LOC101928398 on UCSC Golden Path with GeneCards custom track
LOC101928398 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LOC101928398 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101928398 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LOC101928398 Gene

Proteins for LOC101928398 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for LOC101928398 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101928398 Gene

Domains & Families for LOC101928398 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC101928398 Gene

Function for LOC101928398 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for LOC101928398 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101928398 Gene

Localization for LOC101928398 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101928398 Gene

Pathways & Interactions for LOC101928398 Gene

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SuperPathways for LOC101928398 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC101928398 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC101928398 Gene

Drugs & Compounds for LOC101928398 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for LOC101928398 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC101928398 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075B6C5_9606 lncRNA 1053 2

RefSeq: NR_109926,

LNCipedia: lnc-ETS2-2:4,

URS0000EF3868_9606 lncRNA 1052 1

Ensembl: ENST00000671443 (view in UCSC) ,

URS00008BC974_9606 lncRNA 1062 3

LncBook: HSALNT0273591,

LNCipedia: lnc-ETS2-2:2,

NONCODE: NONHSAT082125.2,

URS00008B430B_9606 lncRNA 994 3

LncBook: HSALNT0273594,

LNCipedia: lnc-ETS2-2:3,

NONCODE: NONHSAT082127.2,

URS00008B8523_9606 lncRNA 969 3

LncBook: HSALNT0273593,

LNCipedia: lnc-ETS2-2:5,

NONCODE: NONHSAT082126.2,

LOC101928398 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC101928398 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101928398 Gene

No ASD Table

Relevant External Links for LOC101928398 Gene

GeneLoc Exon Structure for
LOC101928398

Expression for LOC101928398 Gene

Products:

  1. Primer
  2. Gene Expression Assay

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101928398 Gene

Orthologs for LOC101928398 Gene

Evolution for LOC101928398 Gene

ENSEMBL:
Gene Tree for LOC101928398 (if available)
TreeFam:
Gene Tree for LOC101928398 (if available)

No data available for Orthologs for LOC101928398 Gene

Paralogs for LOC101928398 Gene

No data available for Paralogs for LOC101928398 Gene

Variants for LOC101928398 Gene

Products:

  1. SNP Genotyping and Copy Number Assay

Additional dbSNP identifiers (rs#s) for LOC101928398 Gene

Structural Variations from Database of Genomic Variants (DGV) for LOC101928398 Gene

Variant ID Type Subtype PubMed ID
nsv587477 CNV loss 21841781

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Variation tolerance and Additional Variant Information for LOC101928398 Gene

Disorders for LOC101928398 Gene

No disorders were found for LOC101928398 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC101928398 Gene

Publications for LOC101928398 Gene

No publications were found for LOC101928398 Gene.

No data available for Mastermind for LOC101928398 Gene

Products for LOC101928398 Gene

Sources for LOC101928398 Gene