LOC101928389 Gene (RNA Gene)

Uncharacterized LOC101928389

GC0XP017547
GIFtS:
8
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Aliases for LOC101928389 Gene

Subcategory (RNA class) for LOC101928389 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LOC101928389 Gene

  • Uncharacterized LOC101928389 3
  • Novel Transcript 5
  • NONHSAG054103.2 91
  • HSALNG0136855 164
  • Lnc-SCML1-1 165
  • Z93022.1 5

External Ids for LOC101928389 Gene

Previous GeneCards Identifiers for LOC101928389 Gene

  • GC0XU901911

Summaries for LOC101928389 Gene

GeneCards Summary for LOC101928389 Gene

LOC101928389 (Uncharacterized LOC101928389) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC101928389 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC101928389 Gene

Genomics for LOC101928389 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for LOC101928389 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH0XJ017527 Promoter/Enhancer 0.8 Ensembl ENCODE CraniofacialAtlas 600.7 -0.8 -752 1.3 SPI1 POLR2A LOC101928389 NHS HSALNG0136854 SCML1
GH0XJ017530 Promoter 0.4 Ensembl 600.7 +1.3 1266 0.2 MAFK LOC101928389 NHS NHS-AS1 SCML1
GH0XJ017529 Promoter 0.4 Ensembl 600.7 +0.7 666 0.2 ZNF366 LOC101928389 NHS-AS1 NHS SCML1
GH0XJ017528 Promoter 0.4 Ensembl 600.7 +0.2 166 0.4 ZNF366 LOC101928389 NHS-AS1 NHS SCML1
GH0XJ017522 Enhancer 0.6 Ensembl ENCODE 0.4 -6.9 -6935 3 PRDM10 SP1 ZNF513 TOE1 ELF1 NHS HSALNG0136854 LOC101928389 SCML1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC101928389 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC101928389 Gene

Genomic Locations for LOC101928389 Gene
chrX:17,528,435-17,587,160
(GRCh38/hg38)
Size:
58,726 bases
Orientation:
Plus strand
chrX:17,546,558-17,605,281
(GRCh37/hg19)
Size:
58,724 bases
Orientation:
Plus strand

Genomic View for LOC101928389 Gene

Genes around LOC101928389 on UCSC Golden Path with GeneCards custom track
LOC101928389 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LOC101928389 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101928389 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LOC101928389 Gene

Proteins for LOC101928389 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for LOC101928389 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101928389 Gene

Domains & Families for LOC101928389 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC101928389 Gene

Function for LOC101928389 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for LOC101928389 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101928389 Gene

Localization for LOC101928389 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101928389 Gene

Pathways & Interactions for LOC101928389 Gene

PathCards logo

SuperPathways for LOC101928389 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC101928389 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC101928389 Gene

Drugs & Compounds for LOC101928389 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for LOC101928389 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC101928389 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000043F3C7_9606 lncRNA 1554 4

Ensembl: ENST00000433228 (view in UCSC) ,

LncBook: HSALNT0280591,

LNCipedia: lnc-SCML1-1:1,

NONCODE: NONHSAT136402.2,

URS00008C2DAB_9606 lncRNA 1554 1

RefSeq: NR_135631,

LOC101928389 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC101928389 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101928389 Gene

No ASD Table

Relevant External Links for LOC101928389 Gene

GeneLoc Exon Structure for
LOC101928389

Expression for LOC101928389 Gene

Products:

  1. Primer
  2. Gene Expression Assay

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC101928389 Gene

mRNA expression in normal human tissues for LOC101928389 Gene
mRNA expression by GTEx for LOC101928389 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC101928389

genes like me logo Genes that share expression patterns with LOC101928389: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101928389 Gene

Orthologs for LOC101928389 Gene

Evolution for LOC101928389 Gene

ENSEMBL:
Gene Tree for LOC101928389 (if available)
TreeFam:
Gene Tree for LOC101928389 (if available)

No data available for Orthologs for LOC101928389 Gene

Paralogs for LOC101928389 Gene

No data available for Paralogs for LOC101928389 Gene

Variants for LOC101928389 Gene

Products:

  1. SNP Genotyping and Copy Number Assay

Additional dbSNP identifiers (rs#s) for LOC101928389 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC101928389 Gene

Disorders for LOC101928389 Gene

Additional Disease Information for LOC101928389

Open Targets Platform

No disorders were found for LOC101928389 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC101928389 Gene

Publications for LOC101928389 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

No data available for Mastermind for LOC101928389 Gene

Products for LOC101928389 Gene

Sources for LOC101928389 Gene