LOC101928343 Gene (RNA Gene)

Uncharacterized LOC101928343

GC17P074599
GIFtS:
8
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Aliases for LOC101928343 Gene

Subcategory (RNA class) for LOC101928343 Gene

lncRNA

Aliases for LOC101928343 Gene

  • Uncharacterized LOC101928343 3
  • CTD-2006K23.1 3

External Ids for LOC101928343 Gene

Previous GeneCards Identifiers for LOC101928343 Gene

  • GC17U901891
  • GC17P072595

Summaries for LOC101928343 Gene

GeneCards Summary for LOC101928343 Gene

LOC101928343 (Uncharacterized LOC101928343) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC101928343 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC101928343 Gene

Genomics for LOC101928343 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for LOC101928343 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH17J074600 Promoter/Enhancer 0.8 FANTOM5 Ensembl dbSUPER 600.7 +0.9 908 0.5 EZH2 ENSG00000261222 LOC101928343 CD300LF CD300E CD300A GPR142 RAB37 CD300C CD300LB TMEM104
GH17J074598 Enhancer 0.7 FANTOM5 dbSUPER 600.7 -0.5 -458 0.4 ZBTB11 NFIC POLR2A NFIB ZNF398 SMARCA4 ENSG00000261222 LOC101928343 CD300E CD300LF CD300C CD300A CD300LB GPR142 RAB37 TMEM104
GH17J074601 Promoter/Enhancer 0.8 Ensembl dbSUPER 0.7 +2.3 2261 0.6 CTCF RAD21 TRIM22 TSC22D4 SMC3 ZNF654 ENSG00000246731 CD300E GPR142 CD300A CD300LF RAB37 ENSG00000261222 LOC101928343 CD300LD
GH17J074612 Enhancer 0.7 ENCODE dbSUPER 0.4 +13.0 12957 0.2 EED RUNX3 BCL11A IKZF1 JUNB IRF4 BATF MYC MAX ETV6 ENSG00000261222 CD300E LOC101928343 CD300LD
GH17J074620 Promoter/Enhancer 0.7 FANTOM5 Ensembl dbSUPER 0.4 +22.8 22757 1.6 CD300E CD300C CD300LB CD300LF ENSG00000261222 TMEM104 CD300A CD300LD SLC16A5 TTYH2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC101928343 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC101928343 Gene

Genomic Locations for LOC101928343 Gene
chr17:74,599,840-74,625,996
(GRCh38/hg38)
Size:
26,157 bases
Orientation:
Plus strand
chr17:72,595,979-72,603,368
(GRCh37/hg19)
Size:
7,390 bases
Orientation:
Plus strand

Genomic View for LOC101928343 Gene

Genes around LOC101928343 on UCSC Golden Path with GeneCards custom track
LOC101928343 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LOC101928343 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101928343 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LOC101928343 Gene

Proteins for LOC101928343 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for LOC101928343 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101928343 Gene

Domains & Families for LOC101928343 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC101928343 Gene

Function for LOC101928343 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101928343 Gene

Localization for LOC101928343 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101928343 Gene

Pathways & Interactions for LOC101928343 Gene

PathCards logo

SuperPathways for LOC101928343 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC101928343 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC101928343 Gene

Drugs & Compounds for LOC101928343 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for LOC101928343 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC101928343 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000D77F56_9606 lncRNA 2973 1

RefSeq: NR_158152,

LOC101928343 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC101928343 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101928343 Gene

No ASD Table

Relevant External Links for LOC101928343 Gene

GeneLoc Exon Structure for
LOC101928343

Expression for LOC101928343 Gene

Products:

  1. Primer
  2. Gene Expression Assay

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC101928343 Gene

mRNA expression in normal human tissues for LOC101928343 Gene
mRNA expression by GTEx for LOC101928343 Gene

mRNA differential expression in normal tissues according to GTEx for LOC101928343 Gene

This gene is overexpressed in Whole Blood (x25.3), Testis (x6.4), and Spleen (x5.5).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC101928343

genes like me logo Genes that share expression patterns with LOC101928343: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101928343 Gene

Orthologs for LOC101928343 Gene

No data available for Orthologs and Evolution for LOC101928343 Gene

Paralogs for LOC101928343 Gene

No data available for Paralogs for LOC101928343 Gene

Variants for LOC101928343 Gene

Products:

  1. SNP Genotyping and Copy Number Assay

Additional dbSNP identifiers (rs#s) for LOC101928343 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC101928343 Gene

Disorders for LOC101928343 Gene

No disorders were found for LOC101928343 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC101928343 Gene

Publications for LOC101928343 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

No data available for Mastermind for LOC101928343 Gene

Products for LOC101928343 Gene

Sources for LOC101928343 Gene