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Aliases for LOC101928333 Gene

Subcategory (RNA class) for LOC101928333 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC101928333 Gene

  • Uncharacterized LOC101928333 3
  • AC000099.1 5

External Ids for LOC101928333 Gene

Previous GeneCards Identifiers for LOC101928333 Gene

  • GC07U903430

Summaries for LOC101928333 Gene

GeneCards Summary for LOC101928333 Gene

LOC101928333 (Uncharacterized LOC101928333) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC101928333 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC101928333 Gene

Genomics for LOC101928333 Gene

GeneHancer (GH) Regulatory Elements for LOC101928333 Gene

Promoters and enhancers for LOC101928333 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07J127391 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 14.6 +177.4 177381 3 HDGF PKNOX1 SMAD1 SIN3A FEZF1 ZNF2 YY1 POLR2B CBX5 ZNF207 ZNF800 ENSG00000224138 GCC1 RBM28 FSCN3 LOC101928333 LOC100196944 ENSG00000224981 GC07M127372 GC07M127373
GH07J128166 Enhancer 1.4 FANTOM5 Ensembl ENCODE 14.6 +952.6 952641 2.7 SIN3A GLI4 ZNF2 ETS1 ZNF121 GLIS2 ZNF143 KLF7 KLF13 SP3 LOC100196944 ENSG00000242162 CYCSP20 LOC101928333 FSCN3 RBM28 ENSG00000271553 LRRC4 GC07P128208 GC07P128209
GH07J127534 Enhancer 1 VISTA UCNEbase 9 +320.8 320785 3.2 GLIS1 FOXP2 ZIC2 SND1 ENSG00000240790 LOC101928333 GCC1 GC07P127521 GC07P127561 LOC105375490
GH07J127673 Enhancer 0.6 Ensembl 14.6 +458.9 458874 0.4 CBLL2 DACH1 TSC22D4 NFXL1 ZBTB5 ARHGAP35 ZNF366 IKZF1 NCOA4 PRDM1 LOC100196944 LOC101928333 ENSG00000224981 FSCN3 GC07P127653 GC07P127654 SND1 PIR48128
GH07J127165 Enhancer 0.2 FANTOM5 10.5 -49.1 -49123 0.1 LOC101928333 GRM8 GC07M127144
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC101928333 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC101928333 Gene

Genomic Locations for LOC101928333 Gene
chr7:127,215,127-127,229,921
(GRCh38/hg38)
Size:
14,795 bases
Orientation:
Plus strand
chr7:126,855,181-126,869,975
(GRCh37/hg19)
Size:
14,795 bases
Orientation:
Plus strand

Genomic View for LOC101928333 Gene

Genes around LOC101928333 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC101928333 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101928333 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC101928333 Gene

Proteins for LOC101928333 Gene

Post-translational modifications for LOC101928333 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101928333 Gene

Domains & Families for LOC101928333 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC101928333 Gene

Function for LOC101928333 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101928333 Gene

Localization for LOC101928333 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101928333 Gene

Pathways & Interactions for LOC101928333 Gene

SuperPathways for LOC101928333 Gene

No Data Available

Interacting Proteins for LOC101928333 Gene

Gene Ontology (GO) - Biological Process for LOC101928333 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC101928333 Gene

Drugs & Compounds for LOC101928333 Gene

No Compound Related Data Available

Transcripts for LOC101928333 Gene

mRNA/cDNA for LOC101928333 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(4) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101928333 Gene

No ASD Table

Relevant External Links for LOC101928333 Gene

GeneLoc Exon Structure for
LOC101928333

Expression for LOC101928333 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC101928333 Gene

genes like me logo Genes that share expression patterns with LOC101928333: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101928333 Gene

Orthologs for LOC101928333 Gene

Evolution for LOC101928333 Gene

ENSEMBL:
Gene Tree for LOC101928333 (if available)
TreeFam:
Gene Tree for LOC101928333 (if available)

No data available for Orthologs for LOC101928333 Gene

Paralogs for LOC101928333 Gene

No data available for Paralogs for LOC101928333 Gene

Variants for LOC101928333 Gene

Sequence variations from dbSNP and Humsavar for LOC101928333 Gene

SNP ID Clin Chr 07 pos Variation AA Info Type
rs1000113856 -- 127,216,005(+) T/C intron_variant
rs1000828889 -- 127,220,623(+) T/C intron_variant
rs1000900729 -- 127,220,822(+) G/C intron_variant
rs1000932308 -- 127,219,209(+) T/C intron_variant
rs1000988576 -- 127,225,560(+) G/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC101928333 Gene

Variant ID Type Subtype PubMed ID
esv2761367 CNV loss 21179565

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC101928333 Gene

Disorders for LOC101928333 Gene

Additional Disease Information for LOC101928333

No disorders were found for LOC101928333 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC101928333 Gene

Publications for LOC101928333 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for LOC101928333 Gene

Sources for LOC101928333 Gene

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