Aliases for LOC101928272 Gene

Data sources for LOC101928272 Gene:

RNA type for LOC101928272 Gene

lncRNA

Aliases for LOC101928272 Gene

External Ids for LOC101928272 Gene

Previous GeneCards Identifiers for LOC101928272 Gene

  • GC10U901669
  • GC10M009197

Summaries for LOC101928272 Gene

GeneCards Summary for LOC101928272 Gene

LOC101928272 (Uncharacterized LOC101928272) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC101928272 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC101928272 Gene

Genomics for LOC101928272 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC101928272 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J009294 Enhancer 0.5 Ensembl 250.7 +0.7 692 1.8 EBF1 NFE2 BATF ATF2 GATA2 SPI1 MAFK CHD2 RUNX3 LOC101928272 piR-38344-008 ENSG00000287120
GH10J009289 Enhancer 0.3 Ensembl 0.7 +4.8 4792 2.4 CEBPB CEBPG LOC101928272 piR-38344-008
GH10J009302 Enhancer 0.5 ENCODE 0.4 -6.7 -6730 0.1 ZNF654 CTCF ZNF513 RAD21 SMC3 MAX FOXA1 ARID3A LOC101928272 LOC112268059 ENSG00000287120
GH10J009285 Enhancer 0.5 UCNEbase 0.4 +9.7 9686 0.3 GATA2 POLR2A piR-38344-008 LOC101928272 LINC00709
GH10J009208 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.2 +86.3 86313 1.3 BCLAF1 ZNF654 ZNF580 ZNF217 CTCF REST TRIM22 ELF1 CTBP1 RAD21 HSALNG0076096-001 HSALNG0076096-002 MN298114-018 LOC101928272
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC101928272 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC101928272 Gene

Latest Assembly
chr10:8,849,965-9,295,593
(GRCh38/hg38)
Size:
445,629 bases
Orientation:
Minus strand

Previous Assembly
chr10:9,239,329-9,337,556
(GRCh37/hg19 by Entrez Gene)
Size:
98,228 bases
Orientation:
Minus strand

Genomic View for LOC101928272 Gene

Genes around LOC101928272 on UCSC Golden Path with GeneCards custom track
LOC101928272 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LOC101928272 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101928272 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC101928272 Gene

Proteins for LOC101928272 Gene

Post-translational modifications for LOC101928272 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101928272 Gene

Domains & Families for LOC101928272 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC101928272 Gene

Function for LOC101928272 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101928272 Gene

Localization for LOC101928272 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101928272 Gene

Pathways & Interactions for LOC101928272 Gene

PathCards logo

SuperPathways for LOC101928272 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC101928272 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC101928272 Gene

Drugs & Compounds for LOC101928272 Gene

No Compound Related Data Available

Transcripts for LOC101928272 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC101928272 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS000075CB54_9606 lncRNA 2275 3

RefSeq: NR_120635,

LncBook: HSALNT0158761,

LNCipedia: lnc-KIN-9:1,

URS0001BDD4F7_9606 lncRNA 8033 1

LncBook: HSALNT0158733,

URS0001BF01B8_9606 lncRNA 7031 1

LncBook: HSALNT0158732,

URS0001BE9F02_9606 lncRNA 5913 1

LncBook: HSALNT0158759,

URS0001BE6A3B_9606 lncRNA 5630 1

LncBook: HSALNT0158731,

LOC101928272 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC101928272 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101928272 Gene

No ASD Table

Relevant External Links for LOC101928272 Gene

GeneLoc Exon Structure for
LOC101928272

Expression for LOC101928272 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101928272 Gene

Orthologs for LOC101928272 Gene

No data available for Orthologs and Evolution for LOC101928272 Gene

Paralogs for LOC101928272 Gene

No data available for Paralogs for LOC101928272 Gene

Variants for LOC101928272 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LOC101928272 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for LOC101928272 Gene

Variant ID Type Subtype PubMed ID
esv1265522 CNV deletion 17803354
esv2219507 CNV deletion 18987734
esv2625407 CNV deletion 19546169
esv2661702 CNV deletion 23128226
esv2676389 CNV deletion 23128226
esv2732650 CNV deletion 23290073
esv2750976 CNV gain 17911159
esv3305917 CNV mobile element insertion 20981092
esv3353689 CNV insertion 20981092
esv3622303 CNV loss 21293372
nsv1068668 CNV deletion 25765185
nsv507536 OTHER sequence alteration 20534489
nsv521006 CNV loss 19592680

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Variation tolerance and Additional Variant Information for LOC101928272 Gene

Disorders for LOC101928272 Gene

No disorders were found for LOC101928272 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC101928272 Gene

Publications for LOC101928272 Gene

  1. Meta-analysis of genome-wide association studies identifies six new Loci for serum calcium concentrations. (PMID: 24068962) O'Seaghdha CM … Bochud M (PLoS genetics 2013) 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

No data available for Mastermind for LOC101928272 Gene

Products for LOC101928272 Gene

Sources for LOC101928272 Gene