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Aliases for LOC101928188 Gene

Subcategory (RNA class) for LOC101928188 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC101928188 Gene

  • Uncharacterized LOC101928188 3

External Ids for LOC101928188 Gene

Previous GeneCards Identifiers for LOC101928188 Gene

  • GC16U901505
  • GC16M029231

Summaries for LOC101928188 Gene

GeneCards Summary for LOC101928188 Gene

LOC101928188 (Uncharacterized LOC101928188) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC101928188 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC101928188 Gene

Genomics for LOC101928188 Gene

GeneHancer (GH) Regulatory Elements for LOC101928188 Gene

Promoters and enhancers for LOC101928188 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J029219 Promoter/Enhancer 0.9 Ensembl ENCODE dbSUPER 600.7 -0.2 -193 2.7 ENSG00000259807 LOC101928188 RRN3P2 ENSG00000273582 ENSG00000284685
GH16J029218 Promoter/Enhancer 0.9 Ensembl dbSUPER 0.7 +2.0 2005 1.6 MNT EGR2 ENSG00000259807 LOC101928188 ENSG00000279106 ENSG00000284685
GH16J029222 Enhancer 0.7 Ensembl dbSUPER 0.7 -3.8 -3795 3.2 SCRT2 TRIM28 CBX5 ZNF626 ZNF133 ENSG00000273582 ENSG00000259807 ENSG00000260908 RRN3P2 LOC101928188 LOC102723708 ENSG00000284685
GH16J029211 Enhancer 0.5 Ensembl dbSUPER 0.4 +7.9 7905 3 BCL6 ENSG00000259807 ENSG00000260908 RRN3P2 TAOK2 ENSG00000260953 LOC101928188 ENSG00000279106 ENSG00000260517 ENSG00000284685 ENSG00000284649
GH16J029217 Enhancer 0.3 Ensembl 0.7 +3.4 3405 0.4 ZIC2 ENSG00000259807 LOC101928188 ENSG00000279106 ENSG00000284685 ENSG00000284649
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC101928188 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC101928188 Gene

Genomic Locations for LOC101928188 Gene
chr16:29,212,568-29,221,006
(GRCh38/hg38)
Size:
8,439 bases
Orientation:
Minus strand
chr16:29,228,491-29,231,352
(GRCh37/hg19)
Size:
2,862 bases
Orientation:
Minus strand

Genomic View for LOC101928188 Gene

Genes around LOC101928188 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC101928188 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101928188 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC101928188 Gene

Proteins for LOC101928188 Gene

Post-translational modifications for LOC101928188 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101928188 Gene

Domains & Families for LOC101928188 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC101928188 Gene

Function for LOC101928188 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101928188 Gene

Localization for LOC101928188 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101928188 Gene

Pathways & Interactions for LOC101928188 Gene

PathCards logo

SuperPathways for LOC101928188 Gene

No Data Available

Interacting Proteins for LOC101928188 Gene

Gene Ontology (GO) - Biological Process for LOC101928188 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC101928188 Gene

Drugs & Compounds for LOC101928188 Gene

No Compound Related Data Available

Transcripts for LOC101928188 Gene

mRNA/cDNA for LOC101928188 Gene

(1) Additional mRNA sequences :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101928188 Gene

No ASD Table

Relevant External Links for LOC101928188 Gene

GeneLoc Exon Structure for
LOC101928188

Expression for LOC101928188 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC101928188 Gene

mRNA differential expression in normal tissues according to GTEx for LOC101928188 Gene

This gene is overexpressed in Brain - Spinal cord (cervical c-1) (x8.6) and Cervix - Ectocervix (x4.3).
genes like me logo Genes that share expression patterns with LOC101928188: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101928188 Gene

Orthologs for LOC101928188 Gene

No data available for Orthologs and Evolution for LOC101928188 Gene

Paralogs for LOC101928188 Gene

No data available for Paralogs for LOC101928188 Gene

Variants for LOC101928188 Gene

Sequence variations from dbSNP and Humsavar for LOC101928188 Gene

SNP ID Clin Chr 16 pos Variation AA Info Type
rs1000403615 -- 29,212,920(-) C/T non_coding_transcript_variant
rs1000507603 -- 29,219,238(-) CACA/CA genic_upstream_transcript_variant, intron_variant, upstream_transcript_variant
rs1000558266 -- 29,219,101(-) A/C genic_upstream_transcript_variant, intron_variant, upstream_transcript_variant
rs1002853292 -- 29,214,950(-) AAA/AAAA intron_variant
rs1002910994 -- 29,220,541(-) G/A upstream_transcript_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC101928188 Gene

Disorders for LOC101928188 Gene

No disorders were found for LOC101928188 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC101928188 Gene

Publications for LOC101928188 Gene

No publications were found for LOC101928188 Gene.

No data available for External Links for LOC101928188 Gene

Products for LOC101928188 Gene

Sources for LOC101928188 Gene

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