Aliases for LOC101928140 Gene

Subcategory (RNA class) for LOC101928140 Gene

lncRNA

Number of RNA Genes sources:

1 / 14

Aliases for LOC101928140 Gene

  • Uncharacterized LOC101928140 3
  • NONHSAG044803 92

External Ids for LOC101928140 Gene

Previous GeneCards Identifiers for LOC101928140 Gene

  • GC06U902418

Summaries for LOC101928140 Gene

GeneCards Summary for LOC101928140 Gene

LOC101928140 (Uncharacterized LOC101928140) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC101928140 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC101928140 Gene

Genomics for LOC101928140 Gene

GeneHancer (GH) Regulatory Elements for LOC101928140 Gene

Promoters and enhancers for LOC101928140 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J128026 Enhancer 0.2 Ensembl 500.7 -0.1 -64 0.4 ENSG00000227945 LOC101928140 lnc-THEMIS-5 PTPRK
GH06J128028 Enhancer 0.2 Ensembl 500.7 +0.5 536 0.4 ENSG00000227945 LOC101928140 ECHDC1 lnc-THEMIS-6 PTPRK
GH06J128066 Enhancer 0.9 Ensembl 0.3 +39.8 39836 1.8 ZSCAN5C ZIC2 FOXA1 ZNF623 TRIM28 KLF7 ATF2 OSR2 BCL11A KLF9 lnc-THEMIS-6 SOGA3 ENSG00000227945 LAMA2 ECHDC1 LOC101928140 piR-31508-048 PTPRK
GH06J128063 Enhancer 0.9 Ensembl 0.3 +36.1 36135 2 EP300 NCOR1 KDM6A TCF7 FOXA1 ZBTB25 TGIF2 SMARCC2 SKI TEAD1 ENSG00000227945 ECHDC1 lnc-THEMIS-6 LOC101928140 PTPRK
GH06J128024 Enhancer 0.2 Ensembl 0.7 -2.3 -2264 0.8 LOC101928140 lnc-THEMIS-5 PTPRK
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC101928140 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC101928140 Gene

Genomic Locations for LOC101928140 Gene
chr6:128,027,865-128,086,293
(GRCh38/hg38)
Size:
58,429 bases
Orientation:
Plus strand

Genomic View for LOC101928140 Gene

Genes around LOC101928140 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC101928140 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101928140 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC101928140 Gene

Proteins for LOC101928140 Gene

Post-translational modifications for LOC101928140 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101928140 Gene

Domains & Families for LOC101928140 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC101928140 Gene

Function for LOC101928140 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101928140 Gene

Localization for LOC101928140 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101928140 Gene

Pathways & Interactions for LOC101928140 Gene

PathCards logo

SuperPathways for LOC101928140 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LOC101928140 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC101928140 Gene

Drugs & Compounds for LOC101928140 Gene

No Compound Related Data Available

Transcripts for LOC101928140 Gene

mRNA/cDNA for LOC101928140 Gene

3 RNACentral transcripts :
1 REFSEQ mRNAs :
1 NCBI additional mRNA sequence :
2 NONCODE transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101928140 Gene

No ASD Table

Relevant External Links for LOC101928140 Gene

GeneLoc Exon Structure for
LOC101928140

Expression for LOC101928140 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC101928140 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC101928140

genes like me logo Genes that share expression patterns with LOC101928140: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101928140 Gene

Orthologs for LOC101928140 Gene

No data available for Orthologs and Evolution for LOC101928140 Gene

Paralogs for LOC101928140 Gene

No data available for Paralogs for LOC101928140 Gene

Variants for LOC101928140 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for LOC101928140 Gene

SNP ID Clinical significance and condition Chr 06 pos Variation AA Info Type
776153 Benign: not provided 128,083,730(+) G/A NON_CODING_TRANSCRIPT_VARIANT,SYNONYMOUS_VARIANT

Additional dbSNP identifiers (rs#s) for LOC101928140 Gene

Structural Variations from Database of Genomic Variants (DGV) for LOC101928140 Gene

Variant ID Type Subtype PubMed ID
nsv516794 CNV loss 19592680
nsv604642 CNV loss 21841781
nsv604643 CNV loss 21841781
nsv604644 CNV loss 21841781

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC101928140 Gene

Disorders for LOC101928140 Gene

No disorders were found for LOC101928140 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC101928140 Gene

Publications for LOC101928140 Gene

  1. Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche. (PMID: 25231870) Perry JR … Ong KK (Nature 2014) 3 54

No data available for Mastermind for LOC101928140 Gene

Products for LOC101928140 Gene

Sources for LOC101928140 Gene