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Aliases for LOC101928100 Gene

Subcategory (RNA class) for LOC101928100 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for LOC101928100 Gene

  • Uncharacterized LOC101928100 3
  • AC022075.1 5

External Ids for LOC101928100 Gene

Previous GeneCards Identifiers for LOC101928100 Gene

  • GC12U901777

Summaries for LOC101928100 Gene

GeneCards Summary for LOC101928100 Gene

LOC101928100 (Uncharacterized LOC101928100) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC101928100 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC101928100 Gene

Genomics for LOC101928100 Gene

GeneHancer (GH) Regulatory Elements for LOC101928100 Gene

Promoters and enhancers for LOC101928100 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12I010360 Promoter/Enhancer 2 FANTOM5 Ensembl ENCODE dbSUPER 568.8 +0.5 471 7.3 HDGF PKNOX1 ARNT ARID4B SIN3A FEZF1 ZNF2 ZNF213 ZNF143 SP3 LOC101928100 KLRK1 DDX12P ENSG00000213443 KLRA1P EIF2S3B ENSG00000257027 ENSG00000256682 CLEC2D ENSG00000255958
GH12I010391 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 15.7 +31.0 31014 7.4 FOXA2 SMAD1 ARID4B SIN3A FEZF1 ATF7 RUNX3 DEK JUNB REST KLRK1 KLRA1P KLRC3 KLRC4 KLRC2 LOC101928100 TAS2R31 TAS2R20 MAGOHB TAS2R10
GH12I010384 Promoter/Enhancer 1.7 EPDnew FANTOM5 ENCODE dbSUPER 14.9 +23.7 23669 5.1 FOXA2 ZSCAN4 FEZF1 ZEB1 GTF3C2 FOS ZNF362 YY2 CEBPB ZNF662 KLRK1 GC12P010386 TAS2R19 TAS2R31 TAS2R14 TAS2R10 KLRA1P TAS2R15P MAGOHB TAS2R20
GH12I010408 Enhancer 0.8 ENCODE dbSUPER 14.8 +45.6 45622 1.1 STAT1 IRF3 JUNB FEZF1 NCOA2 CHAMP1 JUND ZBTB48 FOXK2 ZBTB17 KLRC4-KLRK1 KLRC4 KLRC3 LOC101928100 KLRC2 KLRK1
GH12I010673 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE 5.4 +310.4 310374 1.5 SIN3A ZNF2 TCF12 GLIS2 ZNF207 ZNF143 RUNX3 SP3 YY2 REST STYK1 KLRA1P MAGOHB TAS2R20 TAS2R14 LOC101928100 GC12P010619
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC101928100 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC101928100 Gene

Genomic Locations for LOC101928100 Gene
chr12:10,363,769-10,398,506
(GRCh38/hg38)
Size:
34,738 bases
Orientation:
Plus strand
chr12:10,516,368-10,551,105
(GRCh37/hg19)

Genomic View for LOC101928100 Gene

Genes around LOC101928100 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC101928100 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101928100 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC101928100 Gene

Proteins for LOC101928100 Gene

Post-translational modifications for LOC101928100 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101928100 Gene

Domains & Families for LOC101928100 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC101928100 Gene

Function for LOC101928100 Gene

Phenotypes From GWAS Catalog for LOC101928100 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101928100 Gene

Localization for LOC101928100 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101928100 Gene

Pathways & Interactions for LOC101928100 Gene

SuperPathways for LOC101928100 Gene

No Data Available

Interacting Proteins for LOC101928100 Gene

Gene Ontology (GO) - Biological Process for LOC101928100 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC101928100 Gene

Drugs & Compounds for LOC101928100 Gene

No Compound Related Data Available

Transcripts for LOC101928100 Gene

mRNA/cDNA for LOC101928100 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101928100 Gene

No ASD Table

Relevant External Links for LOC101928100 Gene

GeneLoc Exon Structure for
LOC101928100

Expression for LOC101928100 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC101928100 Gene

genes like me logo Genes that share expression patterns with LOC101928100: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101928100 Gene

Orthologs for LOC101928100 Gene

Evolution for LOC101928100 Gene

ENSEMBL:
Gene Tree for LOC101928100 (if available)
TreeFam:
Gene Tree for LOC101928100 (if available)

No data available for Orthologs for LOC101928100 Gene

Paralogs for LOC101928100 Gene

No data available for Paralogs for LOC101928100 Gene

Variants for LOC101928100 Gene

Sequence variations from dbSNP and Humsavar for LOC101928100 Gene

SNP ID Clin Chr 12 pos Variation AA Info Type
rs1000052815 -- 10,363,878(+) C/T non_coding_transcript_variant
rs1000102272 -- 10,395,232(+) T/C intron_variant
rs1000147161 -- 10,381,503(+) G/C intron_variant
rs1000156924 -- 10,366,696(+) T/C intron_variant
rs1000194817 -- 10,375,794(+) T/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC101928100 Gene

Variant ID Type Subtype PubMed ID
dgv2358n54 CNV loss 21841781
esv3892136 CNV loss 25118596
nsv1036390 CNV loss 25217958
nsv1051292 CNV loss 25217958
nsv557455 CNV loss 21841781
nsv832328 CNV gain 17160897
nsv8914 CNV loss 18304495

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC101928100 Gene

Disorders for LOC101928100 Gene

Additional Disease Information for LOC101928100

No disorders were found for LOC101928100 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC101928100 Gene

Publications for LOC101928100 Gene

  1. Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population. (PMID: 23251661) Comuzzie AG … Butte NF (PloS one 2012) 3 58
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for LOC101928100 Gene

Sources for LOC101928100 Gene

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