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Aliases for LOC101928053 Gene

Subcategory (RNA class) for LOC101928053 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC101928053 Gene

  • Uncharacterized LOC101928053 3
  • Novel Transcript, Antisense To ZBED5 5
  • AC116535.1 5

External Ids for LOC101928053 Gene

Previous GeneCards Identifiers for LOC101928053 Gene

  • GC11U902093

Summaries for LOC101928053 Gene

GeneCards Summary for LOC101928053 Gene

LOC101928053 (Uncharacterized LOC101928053) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC101928053 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC101928053 Gene

Genomics for LOC101928053 Gene

GeneHancer (GH) Regulatory Elements for LOC101928053 Gene

Promoters and enhancers for LOC101928053 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J010805 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 610.7 -1.3 -1277 5.6 SP1 ZFX CC2D1A SIX5 NKRF POLR2A MLLT1 ZNF121 CEBPG GTF2F1 EIF4G2 LOC101928053 ZBED5 CTR9 ZBED5-AS1 SNORD97 GC11M010801 GC11M010630
GH11J010855 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 20.9 +48.9 48895 4.4 CC2D1A SP1 ELF3 ZFX ZNF148 NKRF POLR2A MLLT1 ZNF121 GTF2F1 ZBED5-AS1 ZBED5 EIF4G2 CTR9 LOC101928053 SNORD97 LOC105376547
GH11J010842 Enhancer 0.5 ENCODE 18.4 +33.8 33794 1.5 CEBPB ELF1 ZBTB33 HLF LOC101928053 EIF4G2 SNORD97 LOC105376547 ZBED5-AS1 ZBED5
GH11J010771 Enhancer 0.4 ENCODE 11.2 -38.2 -38218 0 CTCF NR2F2 EIF4G2 LOC101928053 CTR9 GC11M010799 PIR33578 GC11M010630
GH11J010990 Enhancer 0.9 Ensembl ENCODE 4.5 +181.0 181004 1.4 CBFA2T2 MAFK ZNF639 SMARCA4 LEF1 ZNF316 EP300 NFE2 HDAC2 MAFG LOC101928053 LINC02752 ENSG00000250041
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC101928053 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC101928053 Gene

Genomic Locations for LOC101928053 Gene
chr11:10,809,297-10,822,931
(GRCh38/hg38)
Size:
13,635 bases
Orientation:
Plus strand
chr11:10,830,844-10,844,478
(GRCh37/hg19)
Size:
13,635 bases
Orientation:
Plus strand

Genomic View for LOC101928053 Gene

Genes around LOC101928053 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC101928053 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101928053 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC101928053 Gene

Proteins for LOC101928053 Gene

Post-translational modifications for LOC101928053 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101928053 Gene

Domains & Families for LOC101928053 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC101928053 Gene

Function for LOC101928053 Gene

Phenotypes From GWAS Catalog for LOC101928053 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101928053 Gene

Localization for LOC101928053 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101928053 Gene

Pathways & Interactions for LOC101928053 Gene

PathCards logo

SuperPathways for LOC101928053 Gene

No Data Available

Interacting Proteins for LOC101928053 Gene

Gene Ontology (GO) - Biological Process for LOC101928053 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC101928053 Gene

Drugs & Compounds for LOC101928053 Gene

No Compound Related Data Available

Transcripts for LOC101928053 Gene

mRNA/cDNA for LOC101928053 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(1) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101928053 Gene

No ASD Table

Relevant External Links for LOC101928053 Gene

GeneLoc Exon Structure for
LOC101928053

Expression for LOC101928053 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101928053 Gene

Orthologs for LOC101928053 Gene

Evolution for LOC101928053 Gene

ENSEMBL:
Gene Tree for LOC101928053 (if available)
TreeFam:
Gene Tree for LOC101928053 (if available)

No data available for Orthologs for LOC101928053 Gene

Paralogs for LOC101928053 Gene

No data available for Paralogs for LOC101928053 Gene

Variants for LOC101928053 Gene

Sequence variations from dbSNP and Humsavar for LOC101928053 Gene

SNP ID Clin Chr 11 pos Variation AA Info Type
rs1000275078 -- 10,815,736(+) T/C intron_variant
rs1000306066 -- 10,815,350(+) G/A intron_variant
rs1000413302 -- 10,821,828(+) A/C non_coding_transcript_variant
rs1000497023 -- 10,815,869(+) C/A/T intron_variant
rs1000540728 -- 10,815,483(+) T/G intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC101928053 Gene

Variant ID Type Subtype PubMed ID
nsv483000 CNV loss 15286789

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC101928053 Gene

Disorders for LOC101928053 Gene

No disorders were found for LOC101928053 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC101928053 Gene

Publications for LOC101928053 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

No data available for External Links for LOC101928053 Gene

Products for LOC101928053 Gene

Sources for LOC101928053 Gene

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