Aliases for LOC101928053 Gene

Subcategory (RNA class) for LOC101928053 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LOC101928053 Gene

  • Uncharacterized LOC101928053 3
  • NONHSAG007650.2 91
  • HSALNG0082659 164
  • ZBED5-AS1 165

External Ids for LOC101928053 Gene

Previous GeneCards Identifiers for LOC101928053 Gene

  • GC11U902093

Summaries for LOC101928053 Gene

GeneCards Summary for LOC101928053 Gene

LOC101928053 (Uncharacterized LOC101928053) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC101928053 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC101928053 Gene

Genomics for LOC101928053 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC101928053 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J010805 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 600.7 -1.2 -1197 5.4 ARHGAP35 SP1 HNRNPL GATAD2A ATF7 PRDM10 REST RFX1 SIX5 LEF1 EIF4G2 ENSG00000246308 LOC101928053 lnc-ZBED5-3 ZBED5 CTR9 ZBED5-AS1 lnc-ZBED5-5
GH11J010822 Enhancer 0.7 Ensembl ENCODE 0.4 +14.1 14124 2 RFX1 PKNOX1 HDAC2 CUX1 NR2F1 IRF2 TAL1 TBP BRD4 RFX5 piR-47422-001 ZBED5-AS1 ZBED5 SNORD97 ENSG00000246308 LOC112268072 EIF4G2 LOC101928053 lnc-ZBED5-2
GH11J010818 Enhancer 0.6 Ensembl ENCODE 0.4 +9.7 9684 1.2 ZNF24 FOS FOSL2 JUND ZBED5 ZBED5-AS1 ENSG00000246308 piR-47422-001 EIF4G2 LOC101928053 lnc-ZBED5-2
GH11J010814 Enhancer 0.3 Ensembl 0.4 +6.1 6084 1.2 SPI1 ZBED5 ZBED5-AS1 ENSG00000246308 EIF4G2 LOC101928053 piR-47422-001 lnc-ZBED5-2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC101928053 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC101928053 Gene

Genomic Locations for LOC101928053 Gene
chr11:10,809,117-10,823,143
(GRCh38/hg38)
Size:
14,027 bases
Orientation:
Plus strand

Genomic View for LOC101928053 Gene

Genes around LOC101928053 on UCSC Golden Path with GeneCards custom track
LOC101928053 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LOC101928053 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101928053 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC101928053 Gene

Proteins for LOC101928053 Gene

Post-translational modifications for LOC101928053 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101928053 Gene

Domains & Families for LOC101928053 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC101928053 Gene

Function for LOC101928053 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101928053 Gene

Localization for LOC101928053 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101928053 Gene

Pathways & Interactions for LOC101928053 Gene

PathCards logo

SuperPathways for LOC101928053 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC101928053 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC101928053 Gene

Drugs & Compounds for LOC101928053 Gene

No Compound Related Data Available

Transcripts for LOC101928053 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC101928053 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000030A6F8_9606 lncRNA 2335 4

RefSeq: NR_120540,

LncBook: HSALNT0172016,

LNCipedia: ZBED5-AS1:21,

NONCODE: NONHSAT017995.2,

URS0000D5E1EE_9606 lncRNA 2426 2

LncBook: HSALNT0172015,

LNCipedia: ZBED5-AS1:20,

URS00008BB4E1_9606 lncRNA 2216 2

LNCipedia: ZBED5-AS1:22,

NONCODE: NONHSAT158827.1,

URS0000D585AE_9606 lncRNA 3217 1

LNCipedia: ZBED5-AS1:16,

URS0000D5AC18_9606 lncRNA 2870 1

LNCipedia: ZBED5-AS1:19,

LOC101928053 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC101928053 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101928053 Gene

No ASD Table

Relevant External Links for LOC101928053 Gene

GeneLoc Exon Structure for
LOC101928053

Expression for LOC101928053 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC101928053 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC101928053

genes like me logo Genes that share expression patterns with LOC101928053: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101928053 Gene

Orthologs for LOC101928053 Gene

No data available for Orthologs and Evolution for LOC101928053 Gene

Paralogs for LOC101928053 Gene

No data available for Paralogs for LOC101928053 Gene

Variants for LOC101928053 Gene

Additional dbSNP identifiers (rs#s) for LOC101928053 Gene

Structural Variations from Database of Genomic Variants (DGV) for LOC101928053 Gene

Variant ID Type Subtype PubMed ID
nsv483000 CNV loss 15286789

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Variation tolerance and Additional Variant Information for LOC101928053 Gene

Disorders for LOC101928053 Gene

No disorders were found for LOC101928053 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC101928053 Gene

Publications for LOC101928053 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

No data available for Mastermind for LOC101928053 Gene

Products for LOC101928053 Gene

Sources for LOC101928053 Gene