Aliases for LOC101928008 Gene

Subcategory (RNA class) for LOC101928008 Gene

lncRNA

Number of RNA Genes sources:

2 / 14

Aliases for LOC101928008 Gene

  • Uncharacterized LOC101928008 3
  • Novel Transcript 5
  • HSALNG0082638 167
  • Lnc-SWAP70-2 168
  • AC011092.2 5

External Ids for LOC101928008 Gene

Previous GeneCards Identifiers for LOC101928008 Gene

  • GC11U902104

Summaries for LOC101928008 Gene

GeneCards Summary for LOC101928008 Gene

LOC101928008 (Uncharacterized LOC101928008) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LOC101928008 include Early-Onset Glaucoma and Charcot-Marie-Tooth Disease, Type 4B2.

Additional gene information for LOC101928008 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC101928008 Gene

Genomics for LOC101928008 Gene

GeneHancer (GH) Regulatory Elements for LOC101928008 Gene

Promoters and enhancers for LOC101928008 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC101928008 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC101928008 Gene

Genomic Locations for LOC101928008 Gene
chr11:9,839,142-9,929,263
(GRCh38/hg38)
Size:
90,122 bases
Orientation:
Plus strand
chr11:9,860,690-9,950,810
(GRCh37/hg19)
Size:
90,121 bases
Orientation:
Plus strand

Genomic View for LOC101928008 Gene

Genes around LOC101928008 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC101928008 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101928008 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC101928008 Gene

Proteins for LOC101928008 Gene

Post-translational modifications for LOC101928008 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101928008 Gene

Domains & Families for LOC101928008 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC101928008 Gene

Function for LOC101928008 Gene

Phenotypes From GWAS Catalog for LOC101928008 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101928008 Gene

Localization for LOC101928008 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101928008 Gene

Pathways & Interactions for LOC101928008 Gene

PathCards logo

SuperPathways for LOC101928008 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LOC101928008 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC101928008 Gene

Drugs & Compounds for LOC101928008 Gene

No Compound Related Data Available

Transcripts for LOC101928008 Gene

mRNA/cDNA for LOC101928008 Gene

3 RNACentral transcripts :
1 REFSEQ mRNAs :
1 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
1 LncBook transcripts :
3 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101928008 Gene

No ASD Table

Relevant External Links for LOC101928008 Gene

GeneLoc Exon Structure for
LOC101928008

Expression for LOC101928008 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC101928008 Gene

genes like me logo Genes that share expression patterns with LOC101928008: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101928008 Gene

Orthologs for LOC101928008 Gene

Evolution for LOC101928008 Gene

ENSEMBL:
Gene Tree for LOC101928008 (if available)
TreeFam:
Gene Tree for LOC101928008 (if available)

No data available for Orthologs for LOC101928008 Gene

Paralogs for LOC101928008 Gene

No data available for Paralogs for LOC101928008 Gene

Variants for LOC101928008 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for LOC101928008 Gene

SNP ID Clinical significance and condition Chr 11 pos Variation AA Info Type
647678 Uncertain Significance: Charcot-Marie-Tooth disease type 4 9,845,664(+) C/T MISSENSE_VARIANT
655858 Uncertain Significance: Charcot-Marie-Tooth disease type 4 9,842,652(+) C/T MISSENSE_VARIANT
657809 Uncertain Significance: Charcot-Marie-Tooth disease type 4 9,839,600(+) T/A MISSENSE_VARIANT
659252 Uncertain Significance: Charcot-Marie-Tooth disease type 4 9,858,302(+) T/C MISSENSE_VARIANT
660130 Uncertain Significance: Charcot-Marie-Tooth disease type 4 9,856,719(+) T/C MISSENSE_VARIANT

Additional dbSNP identifiers (rs#s) for LOC101928008 Gene

Structural Variations from Database of Genomic Variants (DGV) for LOC101928008 Gene

Variant ID Type Subtype PubMed ID
esv2087227 CNV deletion 18987734
esv22125 CNV loss 19812545
esv2632556 CNV deletion 19546169
esv2665897 CNV deletion 23128226
esv2744095 CNV deletion 23290073
esv2762895 CNV loss 21179565
esv3579359 CNV loss 25503493
esv3579362 CNV loss 25503493
esv3625343 CNV loss 21293372
esv3625344 CNV loss 21293372
nsv1041148 CNV loss 25217958
nsv1053369 CNV gain 25217958
nsv471749 CNV loss 16327809
nsv517092 CNV loss 19592680
nsv519992 CNV loss 19592680
nsv521169 CNV loss 19592680

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC101928008 Gene

Disorders for LOC101928008 Gene

MalaCards: The human disease database

(3) MalaCards diseases for LOC101928008 Gene - From: GeneCards

Disorder Aliases PubMed IDs
early-onset glaucoma
  • hereditary glaucoma
charcot-marie-tooth disease, type 4b2
  • cmt4b2
charcot-marie-tooth disease
  • peroneal muscular atrophy
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with LOC101928008: view

No data available for UniProtKB/Swiss-Prot , Genatlas and External Links for LOC101928008 Gene

Publications for LOC101928008 Gene

  1. Molecular evolution of an ancient mariner transposon, Hsmar1, in the human genome. (PMID: 9461395) Robertson HM … Zumpano KL (Gene 1997) 3 54
  2. Generation and analysis of 280,000 human expressed sequence tags. (PMID: 8889549) Hillier LD … Marra M (Genome research 1996) 3 54

No data available for Mastermind for LOC101928008 Gene

Products for LOC101928008 Gene

Sources for LOC101928008 Gene