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Aliases for LOC101928005 Gene

Subcategory (RNA class) for LOC101928005 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC101928005 Gene

  • Uncharacterized LOC101928005 3
  • AC106791.1 5

External Ids for LOC101928005 Gene

Previous GeneCards Identifiers for LOC101928005 Gene

  • GC05U901751

Summaries for LOC101928005 Gene

GeneCards Summary for LOC101928005 Gene

LOC101928005 (Uncharacterized LOC101928005) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC101928005 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC101928005 Gene

Genomics for LOC101928005 Gene

GeneHancer (GH) Regulatory Elements for LOC101928005 Gene

Promoters and enhancers for LOC101928005 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05J137887 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 650.7 +0.4 401 2.2 HDGF PKNOX1 SMAD1 FEZF1 ZNF2 YY1 POLR2B ZNF213 E2F8 ZNF207 PKD2L2 LOC101928005 KLHL3 HNRNPA0 CDC23 KDM3B BRD8 MYOT
GH05J137890 Enhancer 0.8 ENCODE dbSUPER 650.7 -1.6 -1576 1.2 MEIS2 FOXA2 ZNF280D ZNF384 PPARG RARA FOXA1 ZNF217 HNF4A MLLT1 LOC101928005 MYOT RNU6-1148P PKD2L2 GC05P137937
GH05J138027 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 5 -142.0 -141962 6.8 HDGF PKNOX1 ARID4B SIN3A DMAP1 ZNF2 YY1 POLR2B ZNF213 ZNF207 LOC100130172 FAM13B BRD8 CDC23 HNRNPA0 RNU6-1148P NME5 WNT8A RNU6-888P KDM3B
GH05J137847 Enhancer 0.8 ENCODE dbSUPER 11 +41.2 41242 1.7 ZNF687 JUNB MEF2B BATF ATF2 IRF4 RELA IKZF1 EED IKZF2 PKD2L2 LOC101928005 KLHL3 RNU6-1148P GC05M137818 NPY6R
GH05J138608 Enhancer 1.1 Ensembl ENCODE 4.7 -721.0 -720983 3.4 PKNOX1 CLOCK NFIB ZNF493 ZSCAN4 NEUROD1 SIN3A RAD21 RFX5 ZNF23 RPL10AP10 CTNNA1 CDC23 HNRNPA0 LOC101928005 HSPA9
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC101928005 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC101928005 Gene

Genomic Locations for LOC101928005 Gene
chr5:137,814,333-137,889,336
(GRCh38/hg38)
Size:
75,004 bases
Orientation:
Minus strand

Genomic View for LOC101928005 Gene

Genes around LOC101928005 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC101928005 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101928005 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC101928005 Gene

Proteins for LOC101928005 Gene

Post-translational modifications for LOC101928005 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101928005 Gene

Domains & Families for LOC101928005 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC101928005 Gene

Function for LOC101928005 Gene

Phenotypes From GWAS Catalog for LOC101928005 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101928005 Gene

Localization for LOC101928005 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101928005 Gene

Pathways & Interactions for LOC101928005 Gene

SuperPathways for LOC101928005 Gene

No Data Available

Interacting Proteins for LOC101928005 Gene

Gene Ontology (GO) - Biological Process for LOC101928005 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC101928005 Gene

Drugs & Compounds for LOC101928005 Gene

No Compound Related Data Available

Transcripts for LOC101928005 Gene

mRNA/cDNA for LOC101928005 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(2) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101928005 Gene

No ASD Table

Relevant External Links for LOC101928005 Gene

GeneLoc Exon Structure for
LOC101928005

Expression for LOC101928005 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC101928005 Gene

genes like me logo Genes that share expression patterns with LOC101928005: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101928005 Gene

Orthologs for LOC101928005 Gene

Evolution for LOC101928005 Gene

ENSEMBL:
Gene Tree for LOC101928005 (if available)
TreeFam:
Gene Tree for LOC101928005 (if available)

No data available for Orthologs for LOC101928005 Gene

Paralogs for LOC101928005 Gene

No data available for Paralogs for LOC101928005 Gene

Variants for LOC101928005 Gene

Sequence variations from dbSNP and Humsavar for LOC101928005 Gene

SNP ID Clin Chr 05 pos Variation AA Info Type
rs1014138812 uncertain-significance, Limb-Girdle Muscular Dystrophy, Dominant, Myofibrillar Myopathy, Dominant, Spheroid body myopathy 137,887,552(-) A/G intron_variant
rs114194130 conflicting-interpretations-of-pathogenicity, uncertain-significance, not specified, Spheroid body myopathy, Limb-Girdle Muscular Dystrophy, Dominant, Myofibrillar Myopathy, Dominant 137,870,994(-) G/A/C/T intron_variant
rs116773838 conflicting-interpretations-of-pathogenicity, likely-benign, benign, not specified, Spheroid body myopathy, Limb-Girdle Muscular Dystrophy, Dominant, Myofibrillar Myopathy, Dominant, Myotilinopathy, Limb-girdle muscular dystrophy, type 1A 137,882,069(-) G/A intron_variant
rs121908457 pathogenic, likely-pathogenic, Limb-girdle muscular dystrophy, type 1A, Myotilinopathy, Progressive distal muscle weakness, Progressive proximal muscle weakness 137,870,815(-) C/T intron_variant
rs121908458 pathogenic, Myotilinopathy, Myofibrillar myopathy 137,870,830(-) C/G/T intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC101928005 Gene

Disorders for LOC101928005 Gene

No disorders were found for LOC101928005 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC101928005 Gene

Publications for LOC101928005 Gene

  1. Identification of heart rate-associated loci and their effects on cardiac conduction and rhythm disorders. (PMID: 23583979) den Hoed M … Loos RJ (Nature genetics 2013) 3 58

Products for LOC101928005 Gene

Sources for LOC101928005 Gene

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