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Aliases for LOC101928002 Gene

Subcategory (RNA class) for LOC101928002 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC101928002 Gene

  • Uncharacterized LOC101928002 3
  • Novel Transcript, Antisense To RAB3IP 5
  • AC025263.1 5

External Ids for LOC101928002 Gene

Previous GeneCards Identifiers for LOC101928002 Gene

  • GC12U901708

Summaries for LOC101928002 Gene

GeneCards Summary for LOC101928002 Gene

LOC101928002 (Uncharacterized LOC101928002) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC101928002 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC101928002 Gene

Genomics for LOC101928002 Gene

GeneHancer (GH) Regulatory Elements for LOC101928002 Gene

Promoters and enhancers for LOC101928002 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J069738 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 616.4 -1.4 -1432 3.6 SP1 ZNF652 ZFX CTCF NKRF CEBPG ZSCAN21 RELA POLR2A SP7 LOC101928002 RAB3IP MYRFL CPSF6 ENSG00000257815 BEST3 ENSG00000258052
GH12J069685 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE 11.4 +50.3 50307 5.5 ELF3 MAFK SP7 ELF1 PRDM1 SMARCA4 FOSL2 GLIS2 GMEB1 POLR2A BEST3 RAB3IP LOC101928002 LYZ MDM2 ENSG00000279551
GH12J069821 Enhancer 0.8 Ensembl ENCODE 18.7 -83.4 -83385 1.5 SCRT2 ZNF10 JUND PRDM4 ZFHX2 HIC1 JUN BCL6 KDM1A FOS PIR46822 LOC101928002 RAB3IP MYRFL ENSG00000258052
GH12J069655 Enhancer 1 Ensembl ENCODE 11.4 +81.6 81637 3.9 CBFA2T2 BACH1 SMARCA4 CREB1 PKNOX1 DPF2 IKZF1 RFX1 ATF1 ATF7 BEST3 RAB3IP LRRC10 LOC101928002 ENSG00000279551 LOC105369823
GH12J069840 Enhancer 0.5 ENCODE 19.1 -102.5 -102532 1.9 CEBPB JUND HNF4A RXRA LOC101928002 RAB3IP MYRFL GC12M069827 ENSG00000258052 ENSG00000257241
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC101928002 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC101928002 Gene

Genomic Locations for LOC101928002 Gene
chr12:69,713,633-69,738,568
(GRCh38/hg38)
Size:
24,936 bases
Orientation:
Minus strand
chr12:70,107,413-70,132,348
(GRCh37/hg19)
Size:
24,936 bases
Orientation:
Minus strand

Genomic View for LOC101928002 Gene

Genes around LOC101928002 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC101928002 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101928002 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for LOC101928002 Gene

Proteins for LOC101928002 Gene

Post-translational modifications for LOC101928002 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101928002 Gene

Domains & Families for LOC101928002 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC101928002 Gene

Function for LOC101928002 Gene

Phenotypes From GWAS Catalog for LOC101928002 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101928002 Gene

Localization for LOC101928002 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101928002 Gene

Pathways & Interactions for LOC101928002 Gene

PathCards logo

SuperPathways for LOC101928002 Gene

No Data Available

Interacting Proteins for LOC101928002 Gene

Gene Ontology (GO) - Biological Process for LOC101928002 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC101928002 Gene

Drugs & Compounds for LOC101928002 Gene

No Compound Related Data Available

Transcripts for LOC101928002 Gene

mRNA/cDNA for LOC101928002 Gene

(1) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(2) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101928002 Gene

No ASD Table

Relevant External Links for LOC101928002 Gene

GeneLoc Exon Structure for
LOC101928002

Expression for LOC101928002 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101928002 Gene

Orthologs for LOC101928002 Gene

Evolution for LOC101928002 Gene

ENSEMBL:
Gene Tree for LOC101928002 (if available)
TreeFam:
Gene Tree for LOC101928002 (if available)

No data available for Orthologs for LOC101928002 Gene

Paralogs for LOC101928002 Gene

No data available for Paralogs for LOC101928002 Gene

Variants for LOC101928002 Gene

Structural Variations from Database of Genomic Variants (DGV) for LOC101928002 Gene

Variant ID Type Subtype PubMed ID
esv3304014 CNV mobile element insertion 20981092
esv3423810 CNV insertion 20981092

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Variation tolerance and Additional Variant Information for LOC101928002 Gene

Disorders for LOC101928002 Gene

No disorders were found for LOC101928002 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC101928002 Gene

Publications for LOC101928002 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

No data available for External Links for LOC101928002 Gene

Products for LOC101928002 Gene

Sources for LOC101928002 Gene

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