Aliases for LOC101928002 Gene

Subcategory (RNA class) for LOC101928002 Gene

lncRNA

Number of RNA Genes sources:

1 / 17

Aliases for LOC101928002 Gene

  • Uncharacterized LOC101928002 3
  • NONHSAG011649.2 91

External Ids for LOC101928002 Gene

Previous GeneCards Identifiers for LOC101928002 Gene

  • GC12U901708

Summaries for LOC101928002 Gene

GeneCards Summary for LOC101928002 Gene

LOC101928002 (Uncharacterized LOC101928002) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC101928002 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC101928002 Gene

Genomics for LOC101928002 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC101928002 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J069738 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 600.7 -1.2 -1232 3.6 RNF2 CEBPG SP1 HNRNPL CREB1 GATAD2A PRDM10 ZNF629 RFX1 LEF1 ENSG00000247131 RAB3IP LOC101928002 MYRFL CPSF6 PRANCR BEST3 piR-56451-035 ENSG00000258052
GH12J069719 Enhancer 0.3 Ensembl 0.4 +19.0 18968 0.4 PRDM10 SMARCA4 MYRFL RAB3IP piR-57461-047 ENSG00000247131 LOC101928002 BEST3
GH12J069731 Enhancer 0.2 Ensembl 0.4 +6.4 6368 0.8 ENSG00000247131 RAB3IP LOC101928002 piR-57461-047 BEST3
GH12J069720 Enhancer 0.2 Ensembl 0.4 +17.9 17868 0.6 MYRFL ENSG00000247131 LOC101928002 RAB3IP piR-57461-047 BEST3
GH12J069715 Enhancer 0.2 Ensembl 0.4 +23.1 23068 0.2 piR-57461-047 BEST3 ENSG00000247131 RAB3IP LOC101928002
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC101928002 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC101928002 Gene

Genomic Locations for LOC101928002 Gene
chr12:69,705,751-69,738,569
(GRCh38/hg38)
Size:
32,819 bases
Orientation:
Minus strand

Genomic View for LOC101928002 Gene

Genes around LOC101928002 on UCSC Golden Path with GeneCards custom track
LOC101928002 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LOC101928002 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101928002 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC101928002 Gene

Proteins for LOC101928002 Gene

Post-translational modifications for LOC101928002 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101928002 Gene

Domains & Families for LOC101928002 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC101928002 Gene

Function for LOC101928002 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101928002 Gene

Localization for LOC101928002 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101928002 Gene

Pathways & Interactions for LOC101928002 Gene

PathCards logo

SuperPathways for LOC101928002 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC101928002 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC101928002 Gene

Drugs & Compounds for LOC101928002 Gene

No Compound Related Data Available

Transcripts for LOC101928002 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC101928002 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000E60ADA_9606 lncRNA 2518 1

RefSeq: NR_110072,

URS0000E60AA4_9606 lncRNA 1504 1

RefSeq: NR_159972,

URS0000E60AD2_9606 lncRNA 690 1

RefSeq: NR_159971,

URS00009AF1E8_9606 lncRNA 3084 1

NONCODE: NONHSAT163718.1,

LOC101928002 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC101928002 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101928002 Gene

No ASD Table

Relevant External Links for LOC101928002 Gene

GeneLoc Exon Structure for
LOC101928002

Expression for LOC101928002 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC101928002 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC101928002

genes like me logo Genes that share expression patterns with LOC101928002: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101928002 Gene

Orthologs for LOC101928002 Gene

No data available for Orthologs and Evolution for LOC101928002 Gene

Paralogs for LOC101928002 Gene

No data available for Paralogs for LOC101928002 Gene

Variants for LOC101928002 Gene

Additional dbSNP identifiers (rs#s) for LOC101928002 Gene

Structural Variations from Database of Genomic Variants (DGV) for LOC101928002 Gene

Variant ID Type Subtype PubMed ID
esv3304014 CNV mobile element insertion 20981092
esv3423810 CNV insertion 20981092

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Variation tolerance and Additional Variant Information for LOC101928002 Gene

Disorders for LOC101928002 Gene

No disorders were found for LOC101928002 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC101928002 Gene

Publications for LOC101928002 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

No data available for Mastermind for LOC101928002 Gene

Products for LOC101928002 Gene

Sources for LOC101928002 Gene